Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi311g00039 ATGGAATCTTGGAGTTACGTCCCTGAAGAGAAAGGCTATTTGTTTTCTGATGAAATGGATTTTTCACTTGATGCTTTTATGAGAAATAGAAAGGCACTGGTTGAATGGGACAACAAATCCTTCAGTAACTTTGAGAGGGATGGATTTAATTCAGACAGAGAGGTAGTTAAAAGCATGGAATTTGTGGACTTGGGATTTCCTGACTTGTTGCAAAAGTCTTTTCATGGTGGCCAGCCTATGGAGACATCCAGCTGTGAGCTAGACAGTAATTCTAGTAAAAGAGGGAATTCATCCACCCATGTTATTGCTTTAGATTCATCTTTGGGGGAGGAAGAATCTGAGTCAAAGCATCTAAGTTCTCTAATTGAATCCAAAATTCATGACCCTTCACTGATTGATCTGAAGCTAGGGAGGTTAGCAGATTGTAAAGGTGCAAGCAGTGATAAAGATGCAAAAGAAAGATTCACTTTAACATCTATACATCCAACCACGCTTGCAAAGAGAGCTCGCACTTCCAGTTTACCTGCTCAGGCTCCTGTATGTCAAGTTTATGGCTGTAACATGGATCTTAGCTCCTCAAAGGATTATCACAAAAGGCATAAAGTTTGTGATGTTCACTCCAAGACAGCTAAAGTTATTGTTAATGGCATTGAGCAGAGGTTTTGTCAGCAGTGCAGCAGGTTCCATTTGCTAGCTGAATTTGATGATGGTAAGCGCAGTTGTCGCAGGCGTCTAGCCGGACACAATGAACGCCGAAGAAAACCTCAGTTTGATTACATGACTGGTAAACAACACAAGATTCTTCAGTCATATCAAGGTACCAAGTATCTGGGGTCTTCATTACAGAAACCCCAGTTTGCCTTTCAAGATGTATTTCAAAGTGGCATCCTTTTCCCAGGAAAGCATGATCAAGTCTATCAGGGTGGACACATCAAATTGGAAGATGAATCAATTTGCAGTTCTCAACTAGCAGCACCCATCACAGTTGGTCAGGAGTTAACTAGCTGTGCTCTCTCTCTTCTGTCAGCTCAGTCACAGAATCCATCACACCACTCAGCAGAAAATCCATTAGCCAGTTCTCTTATCTTCCAGGGCATCTGCATGAACGACAGAGATGACCAAGTTTCTGAAACACCTTTGAGGATAAGCTCTGTGGATAAATATGTGCCAAATGAGTCCTTTCCATGTGGGATAGACTCTAAGGAAGTTATCAAGAACAGATCCACAACACTTTCTGATGCTGGTCTGGCTCTTCAAGTACACAGAGATGATATTTGCCAACCATCAGAATCATTCAATATAAAATATCGTCTTCCCTCTGAACATGGAGCCACTGTTGATCTATTTCAGTTGTCTTCTCATCTTCAGAGGGTGGAGCAGCAAAGAAATTCTGTTTTGGTAAAATGGGAAGATGAGGAATGCTGTTTCCCAACTGTGTAA 1440 0.4153 MESWSYVPEEKGYLFSDEMDFSLDAFMRNRKALVEWDNKSFSNFERDGFNSDREVVKSMEFVDLGFPDLLQKSFHGGQPMETSSCELDSNSSKRGNSSTHVIALDSSLGEEESESKHLSSLIESKIHDPSLIDLKLGRLADCKGASSDKDAKERFTLTSIHPTTLAKRARTSSLPAQAPVCQVYGCNMDLSSSKDYHKRHKVCDVHSKTAKVIVNGIEQRFCQQCSRFHLLAEFDDGKRSCRRRLAGHNERRRKPQFDYMTGKQHKILQSYQGTKYLGSSLQKPQFAFQDVFQSGILFPGKHDQVYQGGHIKLEDESICSSQLAAPITVGQELTSCALSLLSAQSQNPSHHSAENPLASSLIFQGICMNDRDDQVSETPLRISSVDKYVPNESFPCGIDSKEVIKNRSTTLSDAGLALQVHRDDICQPSESFNIKYRLPSEHGATVDLFQLSSHLQRVEQQRNSVLVKWEDEECCFPTV 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi311g00039 479 SUPERFAMILY SBT domain 179 260 IPR036893 GO:0003677|GO:0005634
Sebi311g00039 479 ProSiteProfiles Zinc finger SBP-type profile. 178 255 IPR004333 GO:0003677
Sebi311g00039 479 Pfam SBP domain 181 254 IPR004333 GO:0003677
Sebi311g00039 479 FunFam Squamosa promoter-binding-like protein 14 172 242 - -
Sebi311g00039 479 Gene3D - 172 242 IPR036893 GO:0003677|GO:0005634
Sebi311g00039 479 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 97 360 IPR044817 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi311g00039 Sebi-Chr311 644325 648711 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi311g00039 1 477 SBP-box Gene Family AT1G69170 34.517 9.79e-63 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Sebi311g00039 SBP 1.1e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi311g00039 - - gmx:100797372 758.829