Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi311g00035 ATGGGTAGGGGAAAGGTGGAGCTGAAGAGGATTGAGAACAAGATAAACCGTCAAGTCACATTTGCAAAGAGAAGGAATGGTTTGCTCAAGAAGGCTTATGAACTCTCTGTCCTCTGTGATGCTGAGGTTGCCCTCATCATCTTCTCCACCCGTGGCAAGCTCTATGAGTTCTGCAGCACCAATAGCATGGCCAAGACACTTGAACGATATCAAAGATGCAGTTATGGAGCCTTGGAAGTAAACCACCAACCTGAAATGGAGACACAGAGGCGCTACCAAGAGTATCTTAAGCTGAAATCAAAAGTGGAGGCACTACAGAAAACGCAGAGAAACCTTCTTGGGGAAGAATTGGAGCAGTTAGATATGAAGGATCTTGAGCAGCTTGAACGTCAGCTGGACTCTTCCTTGAAGCAAATCAGGTCTAACAAGACACAACAGATGCTTGATCAACTTTCCGATTTGCAAAGAAAGGCCAACTCTGTGATGGTCACACAGGAAGAAATGCTATTGGAAACTAATAATATCCTGCGGAACAAGGTAGAGGTATTAAAAAAATCAATGAATCAATTTGAGGAAATTAACATAGCCCTTCAACCAACATGGGAAGCTAGGGAGCAAAATGCTCCCTACAACTGTCACCCTCCCCAATCAGAGGGATACTATGACCCAACACATCTCAATAGTACATTGCGAATCAGCTACGATTCCTCTGTGTTAAATGAAGCAGGAGGAGTTGCAGGAACCTCAGCCCAAAATGCCACCAGTGAACTCATGCATGGATGGATGGCCTGA 792 0.447 MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSTRGKLYEFCSTNSMAKTLERYQRCSYGALEVNHQPEMETQRRYQEYLKLKSKVEALQKTQRNLLGEELEQLDMKDLEQLERQLDSSLKQIRSNKTQQMLDQLSDLQRKANSVMVTQEEMLLETNNILRNKVEVLKKSMNQFEEINIALQPTWEAREQNAPYNCHPPQSEGYYDPTHLNSTLRISYDSSVLNEAGGVAGTSAQNATSELMHGWMA 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi311g00035 263 Gene3D - 13 112 IPR036879 GO:0003677|GO:0046983
Sebi311g00035 263 FunFam MADS-box transcription factor 1 13 108 - -
Sebi311g00035 263 Coils Coil 122 145 - -
Sebi311g00035 263 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Sebi311g00035 263 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Sebi311g00035 263 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Sebi311g00035 263 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Sebi311g00035 263 SUPERFAMILY SRF-like 2 87 IPR036879 GO:0003677|GO:0046983
Sebi311g00035 263 Pfam K-box region 86 180 IPR002487 GO:0003700|GO:0005634|GO:0006355
Sebi311g00035 263 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Sebi311g00035 263 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Sebi311g00035 263 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Sebi311g00035 263 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Sebi311g00035 263 Coils Coil 173 193 - -
Sebi311g00035 263 ProSiteProfiles K-box domain profile. 88 186 IPR002487 GO:0003700|GO:0005634|GO:0006355
Sebi311g00035 263 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 171 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi311g00035 Sebi-Chr311 587978 596846 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi311g00035 1 262 MADS-box Gene Family AT5G15800 56.044 4.06e-91 268
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Sebi311g00035 K-box 2.9e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi311g00035 K09264 - gmx:100811049 413.69