Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi310g00042 ATGTCCATACCACCATTTTCATTTTCACTCTGTCTCACCTTCCTTTTACTATTTGCACCATTACTCCTAGCTCAATCTCCATCAAACAATGCTTCTCTTTCTCCTTCTTCTTCATCTTCTACTGCTTCTGCTTGCAAGTTCACAATGTATCCAAAACTCTGCCGTTCCATACTCTCAGCTATCCGTTCCTCACCATCTGATCCATATGGCTATGGCAAGTTTTCCATCAAACAGAGCCTCAAACAGGCAAGGAAACTATCCAAAGTGTTTGAGGATTTCCTCAAACGCCACCAATCTTCCTCTCTAAACCATGCTGAGATTGCTGCATTAGGTGACTGCAGAGACCTCAATCAACTCAATGTGGACTACTTGGGGTCCATCTCAGAGGAGCTAAAATCAGCTGGTTCTAACACAGAACTGGTTGAGAAAATTGAAAGCCATTTGAGTGCTGTGGCCACAAACCATTACACTTGCTATGATGGGTTGGTGGTGACTAAGAGCAACATTGCAAATGCTCTTGCTGTGCCACTCAAGGATGGGACTCAATTGTATAGTGTCTCACTTGGGTTGGTCACTGAGGCTCTTAACAAAAACTTCAAGATGAATAAAACACGCAAACATGGCCTTCCTACTAAGTCCTTCAAGGTTAGGCAGCCACTTGAGAAGCTCATCAAGCTTCTTCGCACAAAGTATAGATGCAATAAATCATCCAATTGTACTAGAACTGAAAGGATTCTTAAAGAAAGCAGTAGCCAAGGAATTCTATTGTACGATTTTGTGATTGTGAGCCCTTATAATGGGACAGACAACTACACTTCCATTGGAGATGCTATTGCTGCTGCACCCAATAACACACAGCCACAAGATGGCTATTTCCTTATCTATGTTAGAGAAGGATACTATGAGGAATATGTAATTGTTCCCAAAGAAAAGAAGAATATCCTTCTAGTTGGAGATGGTATTAACAAGACTGTCATCACAGGGAACCATAGTGTCATTGATGGTTGGACAACTTTCAATTCTTCCACATTTGCTGTTGCTGGAGAAAGATTTATAGCAGTGGATGTTACATTCAGAAACACAGCTGGTCCTGAAAAGCACCAAGCAGTAGCAGTGAGGAACAATGCTGACCTTTCCACATTCTATCGTTGTAGTTTTGAAGGATATCAAGACACACTCTATGTTCACTCTTTGAGGCAATTTTATAGGGATTGTGATATCTATGGTACTGTTGACTTCATTTTTGGCAATGCTGCTGTGGTTTTCCAGAACTGTAACATCTACGCCAGAAAACCATTGCCAAACCAGAAGAATGCTGTCACAGCACAAGGCAGAACTGATCCCAATCAAAACACTGGCATTTCAATCCAAAACTGCACAATTGATGCTGCACCAGACTTGGCTGCAGACTTAAATTCCACCATGAGTTACTTAGGCCGGCCATGGAAGTTGTATTCAAGAACTGTGTATCTGCAGTCATATATTGGAGATCTAATTCAACCTTCTGGATGGTTAGAGTGGAATGGGACAGTTGGGTTAGACACCCTCTTTTATGGTGAGTTTAACAACTATGGACCAGGTTCTAACACTAACAATAGAGTACAATGGCCTGGTTACTCTCTGTTGAATGCTACTCAAGCTTGGAACTTCACAGTCTTTAATTTTACATTGGGAAATACATGGCTTCCTGACACAGATATACCCTATGCTGAAGGATTACAAAATTAG 1728 0.4138 MSIPPFSFSLCLTFLLLFAPLLLAQSPSNNASLSPSSSSSTASACKFTMYPKLCRSILSAIRSSPSDPYGYGKFSIKQSLKQARKLSKVFEDFLKRHQSSSLNHAEIAALGDCRDLNQLNVDYLGSISEELKSAGSNTELVEKIESHLSAVATNHYTCYDGLVVTKSNIANALAVPLKDGTQLYSVSLGLVTEALNKNFKMNKTRKHGLPTKSFKVRQPLEKLIKLLRTKYRCNKSSNCTRTERILKESSSQGILLYDFVIVSPYNGTDNYTSIGDAIAAAPNNTQPQDGYFLIYVREGYYEEYVIVPKEKKNILLVGDGINKTVITGNHSVIDGWTTFNSSTFAVAGERFIAVDVTFRNTAGPEKHQAVAVRNNADLSTFYRCSFEGYQDTLYVHSLRQFYRDCDIYGTVDFIFGNAAVVFQNCNIYARKPLPNQKNAVTAQGRTDPNQNTGISIQNCTIDAAPDLAADLNSTMSYLGRPWKLYSRTVYLQSYIGDLIQPSGWLEWNGTVGLDTLFYGEFNNYGPGSNTNNRVQWPGYSLLNATQAWNFTVFNFTLGNTWLPDTDIPYAEGLQN 575
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi310g00042 575 Gene3D Invertase/pectin methylesterase inhibitor family protein 41 193 IPR035513 -
Sebi310g00042 575 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 43 192 IPR035513 -
Sebi310g00042 575 Pfam Pectinesterase 264 558 IPR000070 GO:0030599|GO:0042545
Sebi310g00042 575 SUPERFAMILY Pectin lyase-like 260 572 IPR011050 -
Sebi310g00042 575 ProSitePatterns Pectinesterase signature 2. 407 416 IPR033131 -
Sebi310g00042 575 NCBIfam pectinesterase inhibitor domain 13 174 IPR006501 GO:0004857
Sebi310g00042 575 Gene3D - 260 575 IPR012334 -
Sebi310g00042 575 Pfam Plant invertase/pectin methylesterase inhibitor 42 189 IPR006501 GO:0004857
Sebi310g00042 575 FunFam Pectinesterase 256 573 - -
Sebi310g00042 575 PANTHER PECTINESTERASE 19 563 - -
Sebi310g00042 575 SMART PMEI_2 36 190 IPR006501 GO:0004857
Sebi310g00042 575 CDD PMEI-like_3 45 193 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi310g00042 Sebi-Chr310 1112355 1118262 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi310g00042 44 573 Carbohydrate Esterase AT3G10720 64.246 0.0 718
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi310g00042 K01051 - gmx:100816503 981.859