Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi310g00041 ATGTCATCCTTCAAATCCTACGGGAAAGTTGATGAACACGAGCAAATGGTGTTGGAAGCCAAGAGGAAAACACGAAAGAGAATCACAATCATAAGCTTGTCCACAATAATCCTCGCTGGGGTTGTATTTGCTGCTGTATTTGGAATCGTTAGCAACTCTAGTGACAACTCACAAAGTGGAAATGCTCCTCAATCTGTGGCCAATTCAGTGAAGGCTGTTTGTGATGTGACACTGTATAAGGACTCATGTTACAGAAGCCTTGGCTCTGTTGTGGACTCTGCAGGCCAGGTTCAGCCTGAGGAGCTGTTCAAGTTGTCCATTAAAGTGGCCTTAACTGAAGTGTCTAAAGCTGATGAGTATTTCAGTGAGCATGGAGTTTTCAAAGGCTTGAATACTGATAGCAGGACTAAAGAAGCTTTGAAAAATTGCAGGGATCTTTTGGATCTTGCAGTTGATCACTTAAATAGCACTTTGATTTCTGGAGAAAATTCTTCCCTTCTTGACGTTTTTGAAGATCTTCAAACATGGTTAAGTGCTGCAGGAACATACCAGCAGACATGCATTGAAGGCTTTGAGGATGCAAAAGAAGCACTGAAGGCAAGTGTAGTAAGCTATCTTAAAAACTCTACAGAATTCACCAGCAACAGTCTTGCCATCATAACCTGGATTAACAAGGCTACAAGCACACTGAACTTGAGGCGCTTACTGAGTTTACCTTATCAGAATGAAGCACCGGAATGGCTTCATTCAAAAGACAGGAAGCTTCTTAGAACACAGGATTTGAAGTGGAAAGCTGATATTGTTGTGGCCAAAGATGGAAGTGGGAAATATAAAACTATTTCTGCTGCACTTAAGCATGTTCCTAATAAGAGTAACAAGAGGACTGTGATCTATGTGAAGAAAGGGATTTACTATGAAAATGTGAGGGTAGAGAAGACCAAATGGAATGTGGTGATGATTGGTGATGGAATGACTGCTACACTTGTATCTGGCAGGCGTAACTTTGTGGATGGCACCCCAACATTTTCAAGTGCAACATTTGCTGTGTTTGGAAGGAATTTCATAGCTAGAGACATGGGGTTTCGCAACACAGCTGGTCCTCAGAAGCATCAAGCAGTAGCACTGATGACAAGTGCTGATCAAGCAGTGTACTATAGGTGTCACATTGATGCATTTCAAGACACTCTCTATGCTCATTCCAATCGCCAATTTTATAGAGAATGCAACATCTATGGGACAGTTGATTTCATTTTTGGCAATTCTGCAGTTGTGATCCAAAACTGCAATATTTTTCCAAAGTTACCTATGCATGGCCAGCAGAACACAATCACAGCACAGGGAAAATTTGACCCTAACATGAACACAGGGATCTCAATTCAAAATTGCAACATTTTACCCTTTGGGAACTTGAGTACTGTCCAAACATACCTTGGAAGACCCTGGAAGAATTACTCAACTACAGTGTACATGAGATCCAGAATGGAAAGTTTTATTAACCCAAATGGCTGGTTACCATGGGTTGGGAACTCAGCACCAGACACCATTTTTTATGCAGAATTTCAGAATGTTGGTCCAGGTGCTTCAACAAAGAATAGGGTGAAATGGAAGGGTTTGAGAACCATTACTAGTAAACAAGCCAACAAGTTTACAGTCAAGGCTTTTCTTCAAGGAGATAGATGGATTCCTGCATCAGGTGCACCCTTTAAGTCTGATCTGTGA 1719 0.4142 MSSFKSYGKVDEHEQMVLEAKRKTRKRITIISLSTIILAGVVFAAVFGIVSNSSDNSQSGNAPQSVANSVKAVCDVTLYKDSCYRSLGSVVDSAGQVQPEELFKLSIKVALTEVSKADEYFSEHGVFKGLNTDSRTKEALKNCRDLLDLAVDHLNSTLISGENSSLLDVFEDLQTWLSAAGTYQQTCIEGFEDAKEALKASVVSYLKNSTEFTSNSLAIITWINKATSTLNLRRLLSLPYQNEAPEWLHSKDRKLLRTQDLKWKADIVVAKDGSGKYKTISAALKHVPNKSNKRTVIYVKKGIYYENVRVEKTKWNVVMIGDGMTATLVSGRRNFVDGTPTFSSATFAVFGRNFIARDMGFRNTAGPQKHQAVALMTSADQAVYYRCHIDAFQDTLYAHSNRQFYRECNIYGTVDFIFGNSAVVIQNCNIFPKLPMHGQQNTITAQGKFDPNMNTGISIQNCNILPFGNLSTVQTYLGRPWKNYSTTVYMRSRMESFINPNGWLPWVGNSAPDTIFYAEFQNVGPGASTKNRVKWKGLRTITSKQANKFTVKAFLQGDRWIPASGAPFKSDL 572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi310g00041 572 SUPERFAMILY Pectin lyase-like 264 569 IPR011050 -
Sebi310g00041 572 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 68 223 IPR035513 -
Sebi310g00041 572 Pfam Pectinesterase 266 558 IPR000070 GO:0030599|GO:0042545
Sebi310g00041 572 CDD PMEI-like_3 72 225 - -
Sebi310g00041 572 Gene3D Invertase/pectin methylesterase inhibitor family protein 67 224 IPR035513 -
Sebi310g00041 572 SMART PMEI_2 65 219 IPR006501 GO:0004857
Sebi310g00041 572 FunFam Pectinesterase 66 224 - -
Sebi310g00041 572 Gene3D - 261 572 IPR012334 -
Sebi310g00041 572 NCBIfam pectinesterase inhibitor domain 45 223 IPR006501 GO:0004857
Sebi310g00041 572 FunFam Pectinesterase 260 572 - -
Sebi310g00041 572 PANTHER PECTINESTERASE 39 562 - -
Sebi310g00041 572 ProSitePatterns Pectinesterase signature 2. 410 419 IPR033131 -
Sebi310g00041 572 Pfam Plant invertase/pectin methylesterase inhibitor 69 219 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi310g00041 Sebi-Chr310 1109515 1111858 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi310g00041 7 572 Carbohydrate Esterase AT3G10710 57.368 0.0 678
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi310g00041 - - gmx:100811152 969.533