Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi310g00020 ATGGATCGTGTTCAAGAGGGACATGGTGATCACCTTAACAATAACAATTTCAAGACTATTGATGGTCGTGGCACTAATGTTCACATTGTCTATGGGGCATGCATTACCATCCAGTTCATTACCAATGTCATCATCCATGGTGTTCATATCCATGATTGCAAACAACTTGGCAATGCTATGGTTGTAGCTCCCCCTCTCATTATGGATGCTCTTTGCTTAGCCAAAGTCTATCTAGAGCGATCAAAGTCTTTCGGAACAACATGTTAG 267 0.4157 MDRVQEGHGDHLNNNNFKTIDGRGTNVHIVYGACITIQFITNVIIHGVHIHDCKQLGNAMVVAPPLIMDALCLAKVYLERSKSFGTTC 88
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi310g00020 88 PANTHER PECTATE LYASE 18-RELATED 11 65 IPR045032 GO:0030570
Sebi310g00020 88 SUPERFAMILY Pectin lyase-like 14 62 IPR011050 -
Sebi310g00020 88 Gene3D - 3 66 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi310g00020 Sebi-Chr310 574587 574853 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi310g00020 15 65 Polysaccharide Lyase AT4G13710 78.431 1.13e-23 90.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi310g00020 K01728 - mnt:21398282 93.5893