Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi310g00015 ATGGAGGGATCTCAGTATTGGATGTGGATGAAGAAAAAGCAAATCCTAATGTCACATCTTCAAGTACCAGTTGGAGATCATGGCAACAATTACTCATCATGGGAAGAAAGGGCTTTTGCTGAAGATTCTGCTAGGATGCTTGGTGGGAGCATATGGCCTCCAAGATCTTACTCTTGTTCCTTTTGTAAAAGAGAGTTTAGGTCTGCTCAAGCTCTTGGTGGTCACATGAATATCCATAGAAGAGACAGAGCTAGGCTCAAACAAAATCTAGCCCTTGATCATCATCACAAAAATGATTTCAAATCATCATCACTAGGTAACCATTTTTCTTCTTCCCAGATAGATTGTTGTCCTAATCCTTGTTCTTCTAGCACTGCAGCAACTACAATTACAACAAGCAGAACCTCACCTTCTAGACTCTCAATTATCTGGGGTAAGCAGGGGTCTTCAAATTCAGAACAAGAAGTCAATGCAAGAGAGGACAATTTTAATGGCTTGGGTTGTAATAATTATGTTGAAACAAGTTTGTCTGTGGGACTCACTTCCATGTTTGGCCAAAAATCACCAATTGTTGCTTGTGGGGACAAAGCCATCATCACTTGTAAAAGACAAAAGACTACCACTACCATTCCTTCTCTGCCTGTTTTTCTCAAGCCATGTTCAAACGATCATAGAAGCCTGATCACTCTCCAACCTAAAGAAATCATAGCTGGACTTAACCCTGGAATGGAAGAGTTAGATCTTGAACTCAGGCTAGGGAAACAGCAGAAAGTTAAGTAG 780 0.4064 MEGSQYWMWMKKKQILMSHLQVPVGDHGNNYSSWEERAFAEDSARMLGGSIWPPRSYSCSFCKREFRSAQALGGHMNIHRRDRARLKQNLALDHHHKNDFKSSSLGNHFSSSQIDCCPNPCSSSTAATTITTSRTSPSRLSIIWGKQGSSNSEQEVNAREDNFNGLGCNNYVETSLSVGLTSMFGQKSPIVACGDKAIITCKRQKTTTTIPSLPVFLKPCSNDHRSLITLQPKEIIAGLNPGMEELDLELRLGKQQKVK 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi310g00015 259 SUPERFAMILY beta-beta-alpha zinc fingers 54 84 IPR036236 -
Sebi310g00015 259 SMART c2h2final6 57 79 IPR013087 -
Sebi310g00015 259 ProSitePatterns Zinc finger C2H2 type domain signature. 59 79 IPR013087 -
Sebi310g00015 259 Gene3D Classic Zinc Finger 53 111 - -
Sebi310g00015 259 ProSiteProfiles Zinc finger C2H2 type domain profile. 57 84 IPR013087 -
Sebi310g00015 259 PANTHER OS07G0101800 PROTEIN 28 255 - -
Sebi310g00015 259 Pfam C2H2-type zinc finger 57 81 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi310g00015 Sebi-Chr310 434208 434987 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi310g00015 29 88 C2H2 Transcription Factor Family AT2G37740 78.333 1.44e-27 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Sebi310g00015 zf-C2H2_6 1.3e-06 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi310g00015 - - lja:Lj0g3v0352099.1 279.641