Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi310g00006 ATGGCTCTTGTGAATGGACCAATTGACATGGTTAGGAACATCTGTGGAGAGAAAGATTCATGGAGATTGAAAGTGAGGGTTGTCCGACTCTGGAAAAGTTGCTCTAAAAATGATCCTAAGAAAGTTTTCTCTTTGGAGATGGTTTTGGTGGATGCTGAGGGTGCAAGGATACAGACAAGTATCCGTAAACCAATGATCTGCAAATTTGTCGATGTTGTTGTTGAGGGAGAGGTTTACAAGATGATTCACTTTTATGTTGTGAAGAACTTGGGTAACTTTCGTGCCACCAAGCATGAGTTCAAGCTAATTTTCAACAGTAGGACAACTGTCTTTCGTGCTGAAAGCCAACTCATTCCAGAGTTTGGTTTGTCATTGTCATCCTCTGAGGATATAAGGAAAACCAAGGGGGAATCTGAATATTTGTATGACATGATGGGTTTACTTACCGTTGTCTCTGCTGAGAAAAACATTGTTAAAGATGGGAAAACAACACGATTGATTGTGCTTGAGCTCACAGATGATAAGGGTAAAATTAGGTGCACACTGTTCGGGGACTATGTAGACAAAGTGAATGAATTCCTATCATTGAGTGGTACACAGTTAACTGTTGTTGTTATTCAATTTGCAAGAGTTAACACTTACAAGGGTGAAGTTGGTTTGGTCAATGTGTTTAACACTTCACGGCTGTTGTGGAACCCACAAATAGTTGAGGCAATTGATTTTAGAAAAAGTGTTGCTTGCCATGAGGTGGACTCCGATATTTGCATTGGTTTTCTTGATGATGATATTCAGTCTTTGTCCATGAAAGATGAGTTTTTGAATTCATTCCCTCGGAAGAATCTTGAAGAGTTACAAACATGTGAAGAGGATGGATTCTTTGTTGTCCTTGCAACTGTTTTATCTATTATTGATGATCATTGGTGGTATTCAGCATGTAGCTGCAATAGATCTGTTACCACTGATGATGAGGGTCAAAATTATTGTACTAATTGTGCAACTTATGTATCTCAAGTCACTCCAAGGTACAAGCTCAAGTTGCTGGTCTGTGACTGCTTTGAAACTGCAACATTCATTCTCTTTGATAGTCATTGTCGTTACCTGCTTAATAAGTCATGCGAGGAGATGTTGTCAATATCAAAGGTTGAGAGTTCACCCACTTTTCCTGATGAGTTGAAACAAATTGTTGGAAAAGAAATATTGTTCAAGGTTCAAAAGAATGCAGATGTATCTTTTTTTTATGATGATGATGCCTATAAGGTGAAAAAAATATGTGATGATACCGAAATCATTGAGGAATTTAAGACTGATGGCTCCATTGTGACACCCAAAAAGCTCAAGTTTGTGCCCAAGTTTAGTGATATGTCTTCGCCAAATGTTACATGTGAAGTCTCTAAGTGTCTTGATGAAGATTTCAGTATTGTCACACAACCTGAATTTTCCACATTTGAAAAGGGGGACTGTTCTTCTTTTGTTCAAGACATGAGTATTTTAACTGATAGTCAAGTGTCTACCACTTCATTGGTTGAACCTTCCCACCCTGATGTTAACGATAACCCAGATGGAAAGAAAGAAGTGGATAATACCAATATCAGTTTGCTGTGA 1602 0.3826 MALVNGPIDMVRNICGEKDSWRLKVRVVRLWKSCSKNDPKKVFSLEMVLVDAEGARIQTSIRKPMICKFVDVVVEGEVYKMIHFYVVKNLGNFRATKHEFKLIFNSRTTVFRAESQLIPEFGLSLSSSEDIRKTKGESEYLYDMMGLLTVVSAEKNIVKDGKTTRLIVLELTDDKGKIRCTLFGDYVDKVNEFLSLSGTQLTVVVIQFARVNTYKGEVGLVNVFNTSRLLWNPQIVEAIDFRKSVACHEVDSDICIGFLDDDIQSLSMKDEFLNSFPRKNLEELQTCEEDGFFVVLATVLSIIDDHWWYSACSCNRSVTTDDEGQNYCTNCATYVSQVTPRYKLKLLVCDCFETATFILFDSHCRYLLNKSCEEMLSISKVESSPTFPDELKQIVGKEILFKVQKNADVSFFYDDDAYKVKKICDDTEIIEEFKTDGSIVTPKKLKFVPKFSDMSSPNVTCEVSKCLDEDFSIVTQPEFSTFEKGDCSSFVQDMSILTDSQVSTTSLVEPSHPDVNDNPDGKKEVDNTNISLL 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi310g00006 533 Gene3D - 118 251 IPR012340 -
Sebi310g00006 533 Pfam Domain of unknown function DUF223 46 115 IPR003871 -
Sebi310g00006 533 SUPERFAMILY Nucleic acid-binding proteins 13 114 IPR012340 -
Sebi310g00006 533 Gene3D - 7 114 IPR012340 -
Sebi310g00006 533 SUPERFAMILY Nucleic acid-binding proteins 279 421 IPR012340 -
Sebi310g00006 533 CDD RPA1_DBD_C 288 403 IPR047192 -
Sebi310g00006 533 CDD RPA1_DBD_B_like 143 245 - -
Sebi310g00006 533 SUPERFAMILY Nucleic acid-binding proteins 129 246 IPR012340 -
Sebi310g00006 533 Pfam Replication factor-A C terminal domain 292 409 IPR013955 -
Sebi310g00006 533 MobiDBLite consensus disorder prediction 506 533 - -
Sebi310g00006 533 CDD RPA1_DBD_A_like 22 110 - -
Sebi310g00006 533 Gene3D - 267 431 IPR012340 -
Sebi310g00006 533 PANTHER OS03G0429900 PROTEIN 17 407 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi310g00006 Sebi-Chr310 189633 192460 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi310g00006 7 379 Core DNA Replication Machinery Family AT4G19130 23.426 3.70e-18 86.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi310g00006 - - lja:Lj6g3v0884310.1 394.43