Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi30g00047 ATGAACCAAAGGAGAGTGAATATAATCTCTGCTATATCAGTGATTGCACTGATCATCACCATAATTGTTGCTCGTGTCACGTTGAAGCTCTCAAGTGCTTTCTTCCTCATATGTGGAGCTGGTGTTGCTGTGATTCTTGCAGTCTTTGCTTTTGTATTTGTCAGCTTAAGTTACAATCGCAGAAGGAGGCTTTTGGAGTCACAGTTGAAATCTGAAGGCAGAGAGCTTCGAATAGAGTACAGTTTCTTAAGGAAAGTTGCAGGGGTTCCCACAAAGTTCAGATACAAGGAGCTTGAGGAAGCAACCGATGGTTTTCAATCACTTCTTGGAAGAGGCTCCTCTGCTTCAGTCTTCAAAGGGATTCTCAATGAGGGCACTTATGTTGCTGTGAAAAGAATTGATGCAGAGGAAAGAGGAGAAAAGGAGTTTAAATCAGAAGTTGCAGCTATAGCTAGTGTGCATCATGTGAATCTTGTGAGGCTATTGGGCTATTGTAATGCTCCAACAGCACCTAGGTACCTTGTTTATGACTATATCTCAAATGGGTCTTTGGATTGTTGGATTTTTCCAAAAAGGGAATCTCAAAGGCAACGGCGACGTTTTGGATGCTTGTCATGGAATTTGAGGTATAAAGTTGCTATTGATGTTGCTAAGGGACTTGCTTACCTTCACCATGATTGTAGATCAAGGATCTTACACCTTGATGTAAAGCCAGAAAATATACTCTTGGATGAGAATTATAGAGCACTTGTTTCTGATTTTGGTCTCTCAAAGCTTATTGGTAAGGATGAGAGCCAAGTTGTGTCTACAATTAGGGGAACAAGAGGGTACTTGGCCCCTGAATGGCTCTTAGAACAGGGTGTTTCAGATAAAACTGACATCTATAGTTATGGGATGGTTCTATTAGAGATTGTTGGAGGGAGAAAAAATGTGTCTTTGGTGGAAGATGAAAAGGACAAGTCCAAGAGGAAATGGCAGTATTTTCCAAAGATTGTGAATGAGAAAGTGAGGGAAGGAAAATTGATGGAAATTGTTGATCATAGATTAATGGAATGTGGGGGTGTTGATGAGAGAGAGGTGAGAACATTGGTTTATGTTGGTTTGTGGTGTGTGCAAGAGAAGCCAAGGTTGAGGCCTAGTATGGTTCAAGTTGTTGATATGCTTGAAGGGCGTGTGAGGGTGGAGGAGCCACCTGATACTAGAATGATTCTTGTTGATTTGCTATCTGTGGATGAAGATGCAACAGGTAGTAATAACATGCCAAGGTTGGACTCTATGTCCGGTCAAAGAACACAAAGCAATGTTGATTGTACATCTACTACCTATTCGTTTGCTACTACTGTTTTGTCTGGAAGATAG 1359 0.4113 MNQRRVNIISAISVIALIITIIVARVTLKLSSAFFLICGAGVAVILAVFAFVFVSLSYNRRRRLLESQLKSEGRELRIEYSFLRKVAGVPTKFRYKELEEATDGFQSLLGRGSSASVFKGILNEGTYVAVKRIDAEERGEKEFKSEVAAIASVHHVNLVRLLGYCNAPTAPRYLVYDYISNGSLDCWIFPKRESQRQRRRFGCLSWNLRYKVAIDVAKGLAYLHHDCRSRILHLDVKPENILLDENYRALVSDFGLSKLIGKDESQVVSTIRGTRGYLAPEWLLEQGVSDKTDIYSYGMVLLEIVGGRKNVSLVEDEKDKSKRKWQYFPKIVNEKVREGKLMEIVDHRLMECGGVDEREVRTLVYVGLWCVQEKPRLRPSMVQVVDMLEGRVRVEEPPDTRMILVDLLSVDEDATGSNNMPRLDSMSGQRTQSNVDCTSTTYSFATTVLSGR 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi30g00047 452 ProSitePatterns Serine/Threonine protein kinases active-site signature. 231 243 IPR008271 GO:0004672|GO:0006468
Sebi30g00047 452 FunFam Putative receptor-like protein kinase 179 396 - -
Sebi30g00047 452 MobiDBLite consensus disorder prediction 415 434 - -
Sebi30g00047 452 SUPERFAMILY Protein kinase-like (PK-like) 85 389 IPR011009 -
Sebi30g00047 452 ProSiteProfiles Protein kinase domain profile. 103 392 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi30g00047 452 ProSitePatterns Protein kinases ATP-binding region signature. 109 131 IPR017441 GO:0005524
Sebi30g00047 452 Pfam Protein kinase domain 107 386 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi30g00047 452 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 42 399 - -
Sebi30g00047 452 Gene3D Phosphorylase Kinase; domain 1 68 178 - -
Sebi30g00047 452 Gene3D Transferase(Phosphotransferase) domain 1 179 402 - -
Sebi30g00047 452 FunFam Putative receptor-like protein kinase 70 178 - -
Sebi30g00047 452 SMART serkin_6 103 388 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi30g00047 Sebi-Chr30 2426302 2427660 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi30g00047 1 400 Receptor kinase-like Gene Family AT5G20050 64.428 9.44e-180 508
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Sebi30g00047 Pkinase 7.3e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi30g00047 - - gmx:100791152 703.745