Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi30g00012 ATGAAAGACCCAGAAGAGCATCAAGTGAAGTCTTGGAGGCCTCTCCAAAAATCTAGTAGAAGAAAGGGTAGAAGAAGAAGCCAAAGCAAGCAAGATAAATTACAAGAAAGTACAGGACTTGATTCACAAGTGCTGGTTCCTTCTGCTACTTGCAAGAGTCTTGTGTTTCCTCGCAGGCCTGGTTATGGCCAGCTTGGGACTAAGTGTCTCATCAAAGCTAACCACTTCCTTGCAGATATATCAGTATCTGACATGAGCCATTACAATGTTAAAATAACACCTGAAGTAATTTCTCGTAAGACAAACAAGGCTATCATATCAGAGCTTGTTAGGCTTCACAGGAACACTGACTTGGCCATGAGGCTCCCTGTGTATGATGGAGGAAGAAATCTTTACACTGCTGGTTTGCTTCCTTTTACATACAAAGAATTCAATGTAATGTTGAATGAGGAAGATGATTTTACTGGTTGTACTAGGGAAAGAGAATTTAAGGTGGAAATCAAGTATGCAAATCGTGTTAGCATGCAACAACTTCGGGATCTTCTTAGTGGGAAACAAGTGGACACCCCACAAGAAGCGCTTAGTGTCTTTGATATTGTGTTAAGGGAGGTTGCAGCTCAGAGTTATGTATCAATTGGGAGGTTTCTGTATTCTCCTGATGTAAGAAAACCTCAGCAACTGGGTGGTGGGCTTGAATCATGGCGTGGATTCTACCAGAGTATAAGGCCTACTCAGATGGGATTGTCACTTAACATTGATATGTCATCAATGGCATTTATTGAACCACTACCTGTAATTGACTTTGTTGCTCAAATTCTTGGAAAAGATGTGCACTCAAAAACTTTGTCAGATTCAGATCGTGTCAAGATTAAAAAGGCCCTAAGAGGTGTAAAAGTAGAAGTCACACATAGAGGAAATTTTCGAAGGAAGTACAGAATATCAGGACTGACTTCACAGCCAACAAGGGAGCTTATTTTCCCTCTTGATGAGCAAATGAACATGAAATCAGTAGTTGATTATTTTCAAGAAATGTATGGATATACTATCAAATATCCTCATCTACCTTGCCTTCAAGTAGGAAGCCAAAGGAAGGTGAACTATTTGCCAATGGAGTCAAGCCAAGTAGGTGGCATTGTGCAGACAATTCAACAAAACAATTATGAGAATAATCCCTATGCAAAGGAGTTTGGTATCAACATTGACAACAAACTTGCATCAGTTGAGGCTCGGGTTCTTCCTGCTCCATGGTTGAAATATCATGAAACTGGAAGAGAGAAAGAACACTTGCCACAAGTTGGTCAGTGGAATATGATGAACAAGGAATTCAGTGAGGACCCTGTGATTCCTGTATATTCAGCAAGACCGGATCAGGTAAAGAAGGCTTTGAAGTATGTACATTCTGCTGCTCTAGACAAACTTGATGGGAAAGAGTTAGAATTGCTGATTGCCATTCTTCCAGACAATAATGGTTCTCTGTATGGTGACCTGAAAAGAATCTGCGAAACAGATCTTGGGTTGATTTCTCAATGCTGCCTTACAAAGCATGTATTCAAGATTAATAGACAATACCTGGCAAATGTGGCACTAAAAATCAATGTCAAGATGGGAGGAAGAAACACAGTACTTTTGGATGCTTTAAGTTGGAGGATTCCACTAGTTAGTGATATCCCAACAATAATATTTGGAGCTGATGTAACTCATCCAGAATCTGGAGAGGATTCTTGCCCTTCCATTGCTGCTGTTGTAGCCTCCCAGGACTGGCCAGAAGTAACAAAGTATGCAGGGTTGGTTTGTGCCCAGCCACATCGTGAAGAACTCATCCAAGATCTTTTCAAATGTTGGAAAGATCCACAGCGGGGTGTAGTTTATGGTGGTATGATCAGGGAACTTTTACTCTCATTTAAGAAGGCAACTGGACAAAAACCATTGAGGATAATCTTTTACAGGGATGGGGTAAGTGAGGGACAATTCTACCAGGTTTTGCTATATGAGCTTGATGCCATCCGTAAGGCCTGTGCATCTTTGGAACCTAGTTACCAACCTCCAGTAACATTTGTTGTGGTTCAAAAACGGCATCACACTAGACTCTTCTCAAACAATCACGATGACAAAAATAGCACTGATAAGAGTGGGAATATCTTACCTGGTACTGTGGTGGATTCTAAGATCTGTCATCCTACTGAATTCGATTTCTATTTATGCAGTCATGCCGGAATTCAGGGTACAAGTAGACCAGCACACTATCATGTCCTGTGGGACGAGAACAATTTCTCTGCAGATGAGATTCAGTCTCTAACCAACAACTTATGCTACACCTATGCAAGATGTACACGGTCTGTTTCCGTTGTGCCTCCAGCATACTATGCTCATCTGGCAGCCTACAGAGCTAGATTCTACATGGAACCTGATGTTTCTTCTGAGATTGCAAAACTTCGAGGTGCAAGATCAAAAGATAGGCATGTACGGCCACTGCCTGCTCTGAAAGAGAAGGTGAAGAATGTAATGTTTTACTGTTGA 2517 0.4128 MKDPEEHQVKSWRPLQKSSRRKGRRRSQSKQDKLQESTGLDSQVLVPSATCKSLVFPRRPGYGQLGTKCLIKANHFLADISVSDMSHYNVKITPEVISRKTNKAIISELVRLHRNTDLAMRLPVYDGGRNLYTAGLLPFTYKEFNVMLNEEDDFTGCTREREFKVEIKYANRVSMQQLRDLLSGKQVDTPQEALSVFDIVLREVAAQSYVSIGRFLYSPDVRKPQQLGGGLESWRGFYQSIRPTQMGLSLNIDMSSMAFIEPLPVIDFVAQILGKDVHSKTLSDSDRVKIKKALRGVKVEVTHRGNFRRKYRISGLTSQPTRELIFPLDEQMNMKSVVDYFQEMYGYTIKYPHLPCLQVGSQRKVNYLPMESSQVGGIVQTIQQNNYENNPYAKEFGINIDNKLASVEARVLPAPWLKYHETGREKEHLPQVGQWNMMNKEFSEDPVIPVYSARPDQVKKALKYVHSAALDKLDGKELELLIAILPDNNGSLYGDLKRICETDLGLISQCCLTKHVFKINRQYLANVALKINVKMGGRNTVLLDALSWRIPLVSDIPTIIFGADVTHPESGEDSCPSIAAVVASQDWPEVTKYAGLVCAQPHREELIQDLFKCWKDPQRGVVYGGMIRELLLSFKKATGQKPLRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPSYQPPVTFVVVQKRHHTRLFSNNHDDKNSTDKSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENNFSADEIQSLTNNLCYTYARCTRSVSVVPPAYYAHLAAYRARFYMEPDVSSEIAKLRGARSKDRHVRPLPALKEKVKNVMFYC 838
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi30g00012 838 Gene3D paz domain 257 377 - -
Sebi30g00012 838 SUPERFAMILY Ribonuclease H-like 469 802 IPR012337 -
Sebi30g00012 838 SUPERFAMILY PAZ domain 70 387 IPR036085 GO:0005515
Sebi30g00012 838 SMART DUF1785_2 210 262 IPR014811 -
Sebi30g00012 838 CDD Piwi_ago-like 391 800 IPR045246 -
Sebi30g00012 838 ProSiteProfiles Piwi domain profile. 480 801 IPR003165 GO:0003676
Sebi30g00012 838 MobiDBLite consensus disorder prediction 14 28 - -
Sebi30g00012 838 Gene3D - 549 838 IPR036397 GO:0003676
Sebi30g00012 838 Pfam Argonaute linker 1 domain 211 260 IPR014811 -
Sebi30g00012 838 SMART Piwi_a_2 480 801 IPR003165 GO:0003676
Sebi30g00012 838 Pfam N-terminal domain of argonaute 68 201 IPR032474 -
Sebi30g00012 838 SMART PAZ_2_a_3 267 392 IPR003100 GO:0005515
Sebi30g00012 838 FunFam Protein argonaute-2 256 381 - -
Sebi30g00012 838 Pfam PAZ domain 267 383 IPR003100 GO:0005515
Sebi30g00012 838 Pfam Argonaute linker 2 domain 378 419 IPR032472 -
Sebi30g00012 838 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 443 802 - -
Sebi30g00012 838 FunFam protein argonaute 10-like 549 838 - -
Sebi30g00012 838 CDD PAZ_argonaute_like 262 371 - -
Sebi30g00012 838 ProSiteProfiles PAZ domain profile. 263 377 IPR003100 GO:0005515
Sebi30g00012 838 Gene3D - 427 545 - -
Sebi30g00012 838 MobiDBLite consensus disorder prediction 1 40 - -
Sebi30g00012 838 Pfam Piwi domain 481 800 IPR003165 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi30g00012 Sebi-Chr30 577967 596936 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi30g00012 56 838 Eukaryotic Initiation Factors Gene Family AT5G43810 68.177 0.0 1234
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi30g00012 K11593 - gmx:100810235 1469.91