Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi309g00078 ATGGCGACCAAAGAGATGCTCGAAATTAGCAGCGGATCAGGATCCGACCCGGATTCAGACTGGGACGGCTCGGAAGGGGACCCTGATTACGACATGCTCGAAGAAATTCATAGCAACTTCTCGAACCTCTCACTCAAGAACAAGGCGAAGCCGCGCGTTGTTGAAGATAAGGGTCTGGCCACTAAGATAGACCCAGAGGTGCTGGAGATGACAGCACCTTCTTTTGCTGATGAGAATTTTGAAAGAGTTCAGAAAACAATAAAAGATGGACAGCTAGAGAAATTGAAAGTGGACGAATGCAAACTGTATCTGAGGAAGAATGGTCTGAGACTAACTGGAAATAAGGACACACTCATCCAGCGTATAAAGGAGCATCTAGAGATTATAAATGGTGGAGGGGAGAAAAAGTACCCGCCTTGCAGCTTTGTGTTGAATTGTAGAGGTGATGCATGCACGGGTGATGTTGTTTTGTTTGAGCAAAATGTCTATGAAATGTTCAGCATAATATCTAGGAGTGCCAGTGGTCCACCTTGTGGCAAAAGGATTATTGCAGGCCGCATAGTGAAGGAAAGCTATGGTACTGCCAAACAACAGCATACATTTACGATTGAAGTACTCTGGAGCAAGGGAGAAAAGCCTCTACCTCCCCTTTGCCAACTACTGATTAAGGGTCGAAACCTTTATAGGTTGAAGACTTTGAGACAGAAATGGGAGGATGAAGGGAAAAGGCAGAAAACATTGATGGAAAAACACTCAAGGGGATCTATTGCCAGGGCAGATAGAGAAGCAAGGATACAAGAAAAGGAGAAGAGAAAAAATATTATGAAAAATAGGATCTCCAAAAAGAATTCAGTAAGGAACCAATGTCAATCACATTCAGGCATTGTGGTGTCACAATATCAACCTCAAAAAACAGAAATAGCCATTTATCCAGAAAAGCCAGAATTTACATCTCAAAATTCAGGTTTACTGGCCAATACAACAAAACAAACATCTGCTATTATAAATAAACCAGCAGCTGTAACTGAACAGCATGGTATGTATGTTCACCATATACATAATCAGCAAACTGGGAAGCTCTCAGCTGAATTTAGTGAGAAATACCACCACCCTTTCACTGACTTCCAATCCAGAGAAAATCCAACTGTCATTGAGAAATACCACTCTTTCATTGCTGAGCCAAACAGATTTACAGAGATGACTTATCATAGGAAGCCTTTGGCAACTGCAAATCACTTTCATCCATTGATGCCCGTGGGAGGTGCTATAAGCAGAGAAAGCTATATGCAGAGACAGTTGTGTAGACATTATTCCCGTGGGAGGTGCTATTTTGGGGACAACTGTAAATTCTTACATGATTTGAGAGACTAA 1371 0.4201 MATKEMLEISSGSGSDPDSDWDGSEGDPDYDMLEEIHSNFSNLSLKNKAKPRVVEDKGLATKIDPEVLEMTAPSFADENFERVQKTIKDGQLEKLKVDECKLYLRKNGLRLTGNKDTLIQRIKEHLEIINGGGEKKYPPCSFVLNCRGDACTGDVVLFEQNVYEMFSIISRSASGPPCGKRIIAGRIVKESYGTAKQQHTFTIEVLWSKGEKPLPPLCQLLIKGRNLYRLKTLRQKWEDEGKRQKTLMEKHSRGSIARADREARIQEKEKRKNIMKNRISKKNSVRNQCQSHSGIVVSQYQPQKTEIAIYPEKPEFTSQNSGLLANTTKQTSAIINKPAAVTEQHGMYVHHIHNQQTGKLSAEFSEKYHHPFTDFQSRENPTVIEKYHSFIAEPNRFTEMTYHRKPLATANHFHPLMPVGGAISRESYMQRQLCRHYSRGRCYFGDNCKFLHDLRD 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi309g00078 456 Coils Coil 258 278 - -
Sebi309g00078 456 SUPERFAMILY SAP domain 82 127 IPR036361 -
Sebi309g00078 456 MobiDBLite consensus disorder prediction 1 32 - -
Sebi309g00078 456 Pfam CCCH-type zinc finger 433 453 IPR041367 -
Sebi309g00078 456 SMART sap_9 92 126 IPR003034 -
Sebi309g00078 456 PANTHER SAP DOMAIN-CONTAINING PROTEIN 22 455 - -
Sebi309g00078 456 SMART c3hfinal6 429 454 IPR000571 GO:0046872
Sebi309g00078 456 Gene3D - 423 456 - -
Sebi309g00078 456 Gene3D SAP domain 78 138 IPR036361 -
Sebi309g00078 456 MobiDBLite consensus disorder prediction 1 18 - -
Sebi309g00078 456 ProSiteProfiles SAP motif profile. 92 126 IPR003034 -
Sebi309g00078 456 ProSiteProfiles Zinc finger C3H1-type profile. 428 455 IPR000571 GO:0046872
Sebi309g00078 456 Pfam SAP domain 92 126 IPR003034 -
Sebi309g00078 456 SUPERFAMILY CCCH zinc finger 429 453 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi309g00078 Sebi-Chr309 1150346 1153509 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Sebi309g00078 SAP 8.8e-10 CL0306
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi309g00078 - - lja:Lj3g3v2576220.1 583.948