Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi309g00074 ATGCAGAATCACAGGCTGAAGCAGCAGCAACAGCAAGCTCTGATGCAACAAGCTCTTCTTCAACAACAGTCTCTCTATCACCCCGGTCTCCTAGCTCCTCCTCCGCAGTGTCGATCTTCGAGTCCTTGCCTTTATGCATATTGGGGATTGTCTGGAACGTCTAGGATTGAACCAATCCCAAGTGGAAATCTGCCTCCTGGTTTTGATCCAACTTCTTGCCGCAGTGTGTATGTGGGGAACATCCATACACAGGTAACTGAGCCGCTTTTGCAAGAAGTTTTTGCAGGTACTGGCCTGGTTGAAAGTGTTAAACTTTTTAGAAAGGAGAAGTCATCCTATGGATTCATTCATTATTTTGATCGGAGATCTGCTGCTCTTGCCATATTATCTCTCAATGGAAGGCATCTATTTGGGCAGCCTATCAAAGTTAACTGGGCATATGCTAGTGGTCAGAGAGAGGATACATCAGGCCATTACAACATATTTGTTGGTGATCTCAGTCCTGAGGTTACTGATGCTACGTTGTTCGCATGCTTTTCTGTCTACCCCAGTTGTTCAGATGCAAGGGTTATGTGGGATCAGAAGACCGGGCGTTCAAGGGGATTTGGATTTGTCTCATTCCGTAATCAACAGGATGCTCAAAGCGCTATAAATGATTTGACCGGTAAGTGGCTTGGAAGTAGACAAATACGCTGCAACTGGGCAACAAAAGGTGCTGGTGGCAATGAAGAGAAGCAAAACTCAGACACCAAAAGTGTTGTGGAACTGACAAATGGTTCATCTGAAGATGGAAAAGAGACATCTAACAGTGATGCTCCTGAGAACAATCCTCAATATACTACTGTTTATGTGGGTAACCTTGGTTCAGAGGTAACACAGCTTGATCTCCATCGCCACTTCCATTCTCTTGGAGCTGGAGTAATAGAGGAGGTTCGTGTTCAGCGTGATAAAGGGTTTGGTTTTGTGAGGTACAGTACTCATGCTGAAGCAGCTCTGGCTATTCAGATGGGGAATTCCCAGTCGATTCTCTGTGGCAAACAAATTAAGTGCTCGTGGGGGAGCAAGCCCACACCACCTGGAACTGCTTCAAATCCTCTTCCCCCACCTGCTGCTGTATCTCTGCCAGGCCTCTCTACCGATCTTTTGGCCTATGAGAGACAGCTAGCAATGAGCAAGATGGGTGGTGTCCATACCTTGATGCATCCTCAAGGCCAACATCCCCTTAAACAGGCAGCAATTGGAGCAAGCCAGGCAATATATGATGGTGGGTTCCAGAATGTTGCAGCTGCACAGCAAATGATGTACTATCAGTAA 1314 0.4642 MQNHRLKQQQQQALMQQALLQQQSLYHPGLLAPPPQCRSSSPCLYAYWGLSGTSRIEPIPSGNLPPGFDPTSCRSVYVGNIHTQVTEPLLQEVFAGTGLVESVKLFRKEKSSYGFIHYFDRRSAALAILSLNGRHLFGQPIKVNWAYASGQREDTSGHYNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGGNEEKQNSDTKSVVELTNGSSEDGKETSNSDAPENNPQYTTVYVGNLGSEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNSQSILCGKQIKCSWGSKPTPPGTASNPLPPPAAVSLPGLSTDLLAYERQLAMSKMGGVHTLMHPQGQHPLKQAAIGASQAIYDGGFQNVAAAQQMMYYQ 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi309g00074 437 Gene3D - 260 359 IPR012677 -
Sebi309g00074 437 SUPERFAMILY RNA-binding domain, RBD 153 244 IPR035979 GO:0003676
Sebi309g00074 437 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 159 237 IPR000504 GO:0003723
Sebi309g00074 437 Gene3D - 157 259 IPR012677 -
Sebi309g00074 437 SUPERFAMILY RNA-binding domain, RBD 270 362 IPR035979 GO:0003676
Sebi309g00074 437 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 280 355 IPR000504 GO:0003723
Sebi309g00074 437 MobiDBLite consensus disorder prediction 237 280 - -
Sebi309g00074 437 FunFam oligouridylate-binding protein 1-like isoform X2 157 252 - -
Sebi309g00074 437 MobiDBLite consensus disorder prediction 240 280 - -
Sebi309g00074 437 CDD RRM2_PUB1 158 237 - -
Sebi309g00074 437 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 74 148 IPR000504 GO:0003723
Sebi309g00074 437 SMART rrm1_1 281 351 IPR000504 GO:0003723
Sebi309g00074 437 SMART rrm1_1 75 144 IPR000504 GO:0003723
Sebi309g00074 437 SMART rrm1_1 160 233 IPR000504 GO:0003723
Sebi309g00074 437 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 76 142 IPR000504 GO:0003723
Sebi309g00074 437 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 282 348 IPR000504 GO:0003723
Sebi309g00074 437 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 161 231 IPR000504 GO:0003723
Sebi309g00074 437 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 72 358 - -
Sebi309g00074 437 FunFam Oligouridylate-binding protein 1C 257 359 - -
Sebi309g00074 437 SUPERFAMILY RNA-binding domain, RBD 59 152 IPR035979 GO:0003676
Sebi309g00074 437 Gene3D - 1 156 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi309g00074 Sebi-Chr309 1081468 1085813 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi309g00074 69 356 Eukaryotic Initiation Factors Gene Family AT4G34110 28.383 4.09e-21 94.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi309g00074 K13201 - gmx:100781227 766.148