Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi309g00072 ATGTCATCTTTCCCTAATTCGGTCTCCGATGGCCGGAAGTCCGGCAAGGCACCGGAGAAGTCCAATTTCTCACAAACTTGCAGCCTCCTCAGCCAGTTCTTGAAGGAGAAGCGCATCTCTGGAGATTCTACCCCCGGAATTGGTGCCAAAATGGACCCTAGAGCAAGCACGAAAGATTTGTTAGCCAATCTACAAAAACCAGATGGGACTTTGAGACTACACGCTTCTGCTATGGATTCCCTTCCCCAGCTTGTGGAAAACCCCTGCATTAAGAAGTCTAATGATAGGTCATCAGGGTCTGAAACTCCCCAAATGACAATATTCTATGCCGGAAAAATGTTAGTATTTGATGGCTTTCCACCAGAGAAGGCAACAGAGGTAATGGAATTAGCCACCAAGTTAGCCTCTGATACTTCTAGCCCTGAAGAAAAAAACCCCCCAAGTGCTCCAGTCACTACTGAAAAATTGAACGAATCCAAAGCACCACAACCAAACACTGCCTCTGCCTCAGAAACCCCTCGACCAGCTGTTGGTTCAGATATGAGGTATCCAAGGAGAGCATCACTTGTAAAATTTCTTGAGAAGAGGAAAGAAAGGGTTATTGCTAGAGGACCTTACCAAATTAATAACCCCAACAACAACCCTAAGCATGAGGGTAGCAGTTCAGGAGGTGAACCTGAAGATCAGTGTTCCAAACAATTTGACCTTAACTTGTAG 717 0.4561 MSSFPNSVSDGRKSGKAPEKSNFSQTCSLLSQFLKEKRISGDSTPGIGAKMDPRASTKDLLANLQKPDGTLRLHASAMDSLPQLVENPCIKKSNDRSSGSETPQMTIFYAGKMLVFDGFPPEKATEVMELATKLASDTSSPEEKNPPSAPVTTEKLNESKAPQPNTASASETPRPAVGSDMRYPRRASLVKFLEKRKERVIARGPYQINNPNNNPKHEGSSSGGEPEDQCSKQFDLNL 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi309g00072 238 SMART tify_2 98 133 IPR010399 -
Sebi309g00072 238 MobiDBLite consensus disorder prediction 128 238 - -
Sebi309g00072 238 ProSiteProfiles Tify domain profile. 98 133 IPR010399 -
Sebi309g00072 238 MobiDBLite consensus disorder prediction 132 173 - -
Sebi309g00072 238 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 13 215 IPR040390 -
Sebi309g00072 238 MobiDBLite consensus disorder prediction 206 238 - -
Sebi309g00072 238 MobiDBLite consensus disorder prediction 1 23 - -
Sebi309g00072 238 Pfam tify domain 101 131 IPR010399 -
Sebi309g00072 238 Pfam Jas motif 185 207 IPR018467 -
Sebi309g00072 238 MobiDBLite consensus disorder prediction 187 202 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi309g00072 Sebi-Chr309 1057100 1058644 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi309g00072 8 223 Tify Gene Family AT1G19180 33.878 8.66e-26 99.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Sebi309g00072 tify 7.7e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi309g00072 K13464 - gmx:100778559 338.961