Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi309g00037 ATGCCTTTGCGCTCTGATGGTTCACTTTGTGTTGCTGACTCCTTTAGGCACTCTGAAGAATGGAGATATGATAATGCAATAGGTGGAGGAAATTCAAATGAAGAAGGTCCAAAGCTTGAAGACTTCTTGGGTTGTTACTCAAACTCTCCCCTGGCTGAAACCAAAGTCTTCTGCCAAGGCTCCCAACATGACCAAAACCAGAATAATATTTCCAAAATCAATGTTAATGTGGCCCCAAGCTTTTGCACCAATACTGAAATTGAAACTGGGGAGAATCTCACACACCCTTCTCCCTTGCTCCACTCTTTCCATGCATATAGTGATAACCCACATGCCCTCATCCCCAACAATACCATGTACAAGTCCTGGTTGGCTCAAACTCAGTTTTCTGATGGAAAACCTTCAGCTGAGGCAAATGGGTGTAATTTCCAATCTCTGTCCTTGACTATGAGCCCCAGTGTACAAAATGGGGTGGGTGCAATTTCCCCTGTTCCAGTCAATGAAGACACTCGTAAAAGGTCCTTGGCAAAATCTCATGCTAGGGAACCTGTCCCTCGCAAATCTATTGATACTTTTGGGCAGAGAACATCTCAATATCGTGGTGTTACAAGAGAATATACTAACGGTCTGCTTCATGCACTGGTTGGATTCTTTCTCCTTTCATGGCTTCTTCAAATCTTCACAGTTTACCTTGGTGGTTATGATAAGGAAGAAAAAGCAGCAAGGGCTTATGACTTAGCTGCACTCAAGTATTGGGGTCCAACAACTCACATAAATTTCCCTTTAAGCACTTATGAGAAGGAACTGGAAGAGATGAAGCACATGACCAGACAAGAATTTGTCGCCAATTTAAGAAGGAAGAGCAGTGGATTTTCAAGAGGGGCATCTGTGTATAGAGGCGTGACAAGACACCATCAACATGGAAGGTGGCAGGCTCGTATAGGAAGGGTTGCAGGGAACAAGGACTTGTATCTTGGTACATTTAGCACACAAGAAGAAGCTGCTGAAGCATATGATATAGCAGCAATCAAGTTCAGGGGAACAAGTGCTGTGACCAACTTTGACATAAGTAAGTATGATGTGAAGAGAATTTGCTCAAGCTCAACTCTAATTGCAGGGGATCTTGCGAAACGGTCTCCAAAAGACACAGCTCCAGCCACTGCTGAGGACTCAAATGCATCTGGTTCATCTGCACCTTCTCAGCCACCTCCTTTGGCCATAACTGAAGGTGAACATTCTGATGAGTTGTCCAACATGGTGTGGAATGCCAACAGTGATGAGCAACTACAGAGTGAGTGTGGAAACACCAATGTCACTGAATCATCACAACAGGTTTCACCAAGCAACAAGAATGCAATGAACCCTCAAAGCCCCAAGAGTTCTGTGGGACTACCAAATGAGTTTGGAGTGAGTGGAGGAGCAGATTATGGACATGGGTACTTCACCCTGCATGGACCAAAATATGATGATGATGGAAGCAATGAAAATGACCACATGAACACCAACAGACTTGGATTGGGTTTGGTTAATCAAGTTCCTATGTTTGCTTTATGGAATGAATGA 1563 0.4389 MPLRSDGSLCVADSFRHSEEWRYDNAIGGGNSNEEGPKLEDFLGCYSNSPLAETKVFCQGSQHDQNQNNISKINVNVAPSFCTNTEIETGENLTHPSPLLHSFHAYSDNPHALIPNNTMYKSWLAQTQFSDGKPSAEANGCNFQSLSLTMSPSVQNGVGAISPVPVNEDTRKRSLAKSHAREPVPRKSIDTFGQRTSQYRGVTREYTNGLLHALVGFFLLSWLLQIFTVYLGGYDKEEKAARAYDLAALKYWGPTTHINFPLSTYEKELEEMKHMTRQEFVANLRRKSSGFSRGASVYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGTSAVTNFDISKYDVKRICSSSTLIAGDLAKRSPKDTAPATAEDSNASGSSAPSQPPPLAITEGEHSDELSNMVWNANSDEQLQSECGNTNVTESSQQVSPSNKNAMNPQSPKSSVGLPNEFGVSGGADYGHGYFTLHGPKYDDDGSNENDHMNTNRLGLGLVNQVPMFALWNE 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi309g00037 520 SMART rav1_2 297 361 IPR001471 GO:0003700|GO:0006355
Sebi309g00037 520 SMART rav1_2 198 267 IPR001471 GO:0003700|GO:0006355
Sebi309g00037 520 CDD AP2 296 357 IPR001471 GO:0003700|GO:0006355
Sebi309g00037 520 SUPERFAMILY DNA-binding domain 224 263 IPR016177 GO:0003677
Sebi309g00037 520 ProSiteProfiles AP2/ERF domain profile. 297 355 IPR001471 GO:0003700|GO:0006355
Sebi309g00037 520 CDD AP2 197 263 IPR001471 GO:0003700|GO:0006355
Sebi309g00037 520 Pfam AP2 domain 296 347 IPR001471 GO:0003700|GO:0006355
Sebi309g00037 520 MobiDBLite consensus disorder prediction 428 464 - -
Sebi309g00037 520 FunFam AP2-like ethylene-responsive transcription factor 296 357 - -
Sebi309g00037 520 MobiDBLite consensus disorder prediction 376 409 - -
Sebi309g00037 520 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 34 439 - -
Sebi309g00037 520 Gene3D AP2/ERF domain 297 357 IPR036955 GO:0003700|GO:0006355
Sebi309g00037 520 Gene3D AP2/ERF domain 197 263 IPR036955 GO:0003700|GO:0006355
Sebi309g00037 520 MobiDBLite consensus disorder prediction 428 465 - -
Sebi309g00037 520 SUPERFAMILY DNA-binding domain 296 357 IPR016177 GO:0003677
Sebi309g00037 520 ProSiteProfiles AP2/ERF domain profile. 198 261 IPR001471 GO:0003700|GO:0006355
Sebi309g00037 520 MobiDBLite consensus disorder prediction 385 403 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi309g00037 Sebi-Chr309 547155 550565 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi309g00037 2 380 AP2-EREBP Transcription Factor Family AT1G72570 49.065 4.79e-110 332
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Sebi309g00037 AP2 1.9e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi309g00037 K09285 - gmx:100805489 810.831