Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi309g00020 ATGAAGTACTCATGTAAGAAAGACTCTGGTCCATGTTCTGTCCATTTGACATCTCCTTGTGTTCTTGGATGCTCATCATGGGGGGCATCTTCTGAATCTGATGTGCAACGAACATCCATGTCCAAAACTTTGGCCATGAAAATGAGTTTTTTGCCACAACAATGTCATAAGGCTAAGCCACTGAGTTTTCAATTTCAAGACCAAGATTCTTCTTCAACTCAATCGACTGGTCAATCTTATCCAGAAGCCGGTCCAGCACAATCAGGTTATCTTTTCTATTTTGAAGCTGGAGGAGTACTCTGTCAAATTTCTGTCCAATATAGCAATTCTTCTGCTTGTTCAACACTTAGCAAAACTGGGGAGAAGAATGTGGAAGGTCTCATCAGGTCATCTGTGGGGAGTCAGGATTTTACCTTCCCTCCTTCACAACTGGGTCACAACCAATCACTTGCGTATAATGCATTCCACCATGCTGAGCCATGCTTTAGTGGCCTACTAGCTGCTCCATATGGCCCACAGCCTAATATTCATCATGCTCAGCTAATAGGAATGGCTCCTGTTCGAATTCCTCTGCCACTTGATCTTTGTGAGGAACCCATATATGTGAATGCAAAGCAGTACCATGCTATTCTGAGACGGAGACAGTATCGTGCAAAGCTTGAAGCACAGAACAAACTCATCAAAGATCGGAAACCATATCTTCATGAGTCCCGCCATCTACATGCAGTGAAGAGAGCTAGAGGTGCTGGTGGACGTTTCCTGAATACCAAAAAGCTCCAAGAGTCAAAGCTTACTTCAACCAACCATGGCTTAGATACTTCCAACTGTACTCAGTTGAATCTGAGTGGAAATATGTCAGAATCTAAGATGCATCAAGTAGAAAACTACAGAGATGGTGCTTCCACAATTACTTGTTCTGATATCACAAGTGCATCTAATAGTGATGACATCTTCAGGCAACAGGAGTCAGACTACAGAATATGTGGTTACCATTCTCATATTGGAAGGAATATGCAGGGTTACTCAGCTGATATGGGTGGCGGCGGCAATCAACACCGTCTATCGGTCCTTATGTGA 1077 0.4327 MKYSCKKDSGPCSVHLTSPCVLGCSSWGASSESDVQRTSMSKTLAMKMSFLPQQCHKAKPLSFQFQDQDSSSTQSTGQSYPEAGPAQSGYLFYFEAGGVLCQISVQYSNSSACSTLSKTGEKNVEGLIRSSVGSQDFTFPPSQLGHNQSLAYNAFHHAEPCFSGLLAAPYGPQPNIHHAQLIGMAPVRIPLPLDLCEEPIYVNAKQYHAILRRRQYRAKLEAQNKLIKDRKPYLHESRHLHAVKRARGAGGRFLNTKKLQESKLTSTNHGLDTSNCTQLNLSGNMSESKMHQVENYRDGASTITCSDITSASNSDDIFRQQESDYRICGYHSHIGRNMQGYSADMGGGGNQHRLSVLM 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi309g00020 358 ProSitePatterns NF-YA/HAP2 subunit signature. 201 221 IPR018362 GO:0003677|GO:0016602
Sebi309g00020 358 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 198 253 IPR001289 GO:0003700|GO:0006355
Sebi309g00020 358 ProSiteProfiles NF-YA/HAP2 family profile. 196 256 IPR001289 GO:0003700|GO:0006355
Sebi309g00020 358 SMART cbf3 195 256 IPR001289 GO:0003700|GO:0006355
Sebi309g00020 358 PRINTS CCAAT-binding transcription factor subunit B signature 199 221 IPR001289 GO:0003700|GO:0006355
Sebi309g00020 358 PRINTS CCAAT-binding transcription factor subunit B signature 230 253 IPR001289 GO:0003700|GO:0006355
Sebi309g00020 358 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 41 319 IPR001289 GO:0003700|GO:0006355
Sebi309g00020 358 Gene3D - 196 257 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi309g00020 Sebi-Chr309 236962 239665 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi309g00020 6 356 CCAAT-HAP2 Transcription Factor Family AT1G17590 39.394 5.91e-61 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Sebi309g00020 CBFB_NFYA 3.7e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi309g00020 K08064 - gmx:100500765 513.072