Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi309g00009 ATGCCGCCGACTATTGTAGGTCCCACCGTCATTGCCATCAATGACGGCCGCAACAGCCAACAAGCCGTCAAATGGGCGGTGGATCACCTCCTGAAGAAGAACTCTTCCTGCACCCTTATTCATGTTCGCACCAAGCCTATCCATCATCATGATGTTGATGTTCCTAAAAACGGTCGTCCACCAACTGAAGATGAATTGCACCAACTCTTCCTTCCCTTTCGAGGATTTTGTGCTAGAAAAGGGATCGTGGCAACAGAGTTGGTCCTGCATGACATTGATATTCCGAGTGCCCTTACTGATTATGTCATTGAAAATTCTATCAGCCATATCGTTGTTGGTGCTTATGCTTCCCCCTGGAGTGCACTTATAAGGAGATTTAATAGAGATGTAGACGTGCCAACTAGCTTAGCAAAGTCTTTGCCAGAGTCTTGCACATTGCATGTTATATCAAAAGGAAAAGTACAAACTATCCGACCAACAGGTCATCCAGCTCCAGTTCCTCAGATTATTCAACCTCAGAATGTTGACGTCACACCAAATACATCTATGAAAAACATAGTCACTCTCTTGCAAAATGCTCCATTGGTTCACCCAAATAACCTTATTGCCAATATCCATGATTCTGAAGATATAAACAGAAAACCATTCAAAGATGCTGCCACTGCACCAGACTCTAAGAATGTTTGGGAATCTTTACGTGAAATGAAAGATGCTATACTAATGACATCACGAAAATCCAATGAAGATACCAATTCACCAAGAGGTCCAAGACTATCAGCTGGAAGCTCCTCATCACTAAATTCATCAAATCGAACCACTCCCAACAATAGTGACAGCTCAGGGCGACTTGGTCTTCCATTGGCTGATGGAAACCATGAAGTACTTGGAAACTCATCAGACAGTTCTAAGAGCAACTCTTTTCCAAAGCCCCTAATAAGCTTGGAGACAGAAATAAAGAAATTAAAACTAGAACTGAAGAAAACAACAGAGCAATATGGTATGGCTTGCAGAGAAGCTGCTTCAGCAAAACAGAAGGCAACGGAGCTTCAAAAATTTAGGCAAGAAAAAGAACGCAACGTTGAAAAAGCTAAGCTTGCTGAAGAGGCTGCATTGGCTTTAGCAGAAGTAGAGAGGCAAAAGGCCAAGGCAGCTATGGAGGCAGCAGAAGTGTCACAAATCCTAGCTGAAATGGAAACTGTAAAGAGAAAGCAAGCCGAAATAAGAGCCAAGCATGAAGAAGAAGAAAGGAGAAAAGCATTACATGAAGCTGTGGTTAATAGTATTCCATATAGAAGATACGATATTAAAGAGATTGAAGCTGCAACTAATAACTTTGACGATGCTCTGAAAATTGGTGAAGGAGGATATGGACCTGTTTTTAAAGGAGTGCTTGATCACACTGTTGTTGCCATTAAGGTCGTGAAACCAGACTTAGCCCATGGAGAGAGGCAATTTCAACAAGAGGTTCTTGTTCTAAGCACCATAAGACATCCGCACATGGTGCTCCTTCTAGCCAACAAAACCACTCAATACCGCTTGACAGGTGCAGCTGGAACATTTTGCTACATTGACCCAGAGTATCAACAAACAGGGTTGTTGGGTGTGAAATCAGACATATATTCATTAGGTGTGGTGCTGCTACAGATTATTACTGCAAAACATCCAATGGGTTTGTCCCTTTTGGTTGAGAAAGCTATCCAGACAGGGACTTTCAAAGAGATGCTTGATCCAAGAGTGGATTGGCCTATTGAAGAGACTTTGTCATTTGCTAGGTTGGCCTTAAAGTGTTGTGAGTTAAGAAAACGAGATAGACCAGATCTTGGTACTGTCATTTTGCCAGAGCTGGAACGAATATCAGAGATGTGGGACTGGGAGGAGTCACTCACATTCACGGAGTATAATTCTCTGCTTTTTTGA 1917 0.4236 MPPTIVGPTVIAINDGRNSQQAVKWAVDHLLKKNSSCTLIHVRTKPIHHHDVDVPKNGRPPTEDELHQLFLPFRGFCARKGIVATELVLHDIDIPSALTDYVIENSISHIVVGAYASPWSALIRRFNRDVDVPTSLAKSLPESCTLHVISKGKVQTIRPTGHPAPVPQIIQPQNVDVTPNTSMKNIVTLLQNAPLVHPNNLIANIHDSEDINRKPFKDAATAPDSKNVWESLREMKDAILMTSRKSNEDTNSPRGPRLSAGSSSSLNSSNRTTPNNSDSSGRLGLPLADGNHEVLGNSSDSSKSNSFPKPLISLETEIKKLKLELKKTTEQYGMACREAASAKQKATELQKFRQEKERNVEKAKLAEEAALALAEVERQKAKAAMEAAEVSQILAEMETVKRKQAEIRAKHEEEERRKALHEAVVNSIPYRRYDIKEIEAATNNFDDALKIGEGGYGPVFKGVLDHTVVAIKVVKPDLAHGERQFQQEVLVLSTIRHPHMVLLLANKTTQYRLTGAAGTFCYIDPEYQQTGLLGVKSDIYSLGVVLLQIITAKHPMGLSLLVEKAIQTGTFKEMLDPRVDWPIEETLSFARLALKCCELRKRDRPDLGTVILPELERISEMWDWEESLTFTEYNSLLF 638
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi309g00009 638 MobiDBLite consensus disorder prediction 243 309 - -
Sebi309g00009 638 SUPERFAMILY Protein kinase-like (PK-like) 422 610 IPR011009 -
Sebi309g00009 638 Pfam Protein tyrosine and serine/threonine kinase 450 508 IPR001245 GO:0004672|GO:0006468
Sebi309g00009 638 Gene3D Phosphorylase Kinase; domain 1 423 508 - -
Sebi309g00009 638 Gene3D Transferase(Phosphotransferase) domain 1 509 623 - -
Sebi309g00009 638 Coils Coil 311 331 - -
Sebi309g00009 638 SMART serkin_6 445 618 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi309g00009 638 ProSiteProfiles Protein kinase domain profile. 445 638 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi309g00009 638 MobiDBLite consensus disorder prediction 244 282 - -
Sebi309g00009 638 MobiDBLite consensus disorder prediction 294 309 - -
Sebi309g00009 638 Coils Coil 339 393 - -
Sebi309g00009 638 PANTHER OS02G0152300 PROTEIN 11 504 - -
Sebi309g00009 638 CDD STK_N 8 152 - -
Sebi309g00009 638 Coils Coil 395 422 - -
Sebi309g00009 638 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 10 118 - -
Sebi309g00009 638 Gene3D HUPs 6 153 IPR014729 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi309g00009 Sebi-Chr309 46971 51128 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi309g00009 504 621 Receptor kinase-like Gene Family AT1G17540 63.866 2.80e-44 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Sebi309g00009 Usp 4.4e-05 CL0039
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi309g00009 - - gmx:100799611 560.451