Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi308g00068 ATGGAAAATTACTACTATTCTGGTTGGCCTCTGGCCACTAATTGGGCTCAGTGCAACTCTGCACCAAACAGTGATGAGTCACCCTTTTCAGTCCCAACACAGTTACTTCCTCTTGCCACTGACTCTGCCTCTCTTCAATTTGGTGAATTCCCTTCATGGCCTGTTGCTGTGCCCATTGAAAATAGAGCTGCAAGTGCTTCCAATAGCCACAGCCAAGCAGAGAAAAGGCGCAGGGACAGAATCAATGCACAGCTTGCAACTCTCAGAAAACTGATTCCCAAGTCTGATAAGATGGACAAGGCAGCATTACTAGGGAGTGTTGTAGACCATGTGAAGGATCTAAAGAGAAAAGCCTTGGATGTCAGCAAAGTCAATACTGTTCCAACTGAAATTGATGAAGTAACAATTGACTATCACTCAGCTCAAGATGAAAGTAACTATAATAGTAGAAACATTGTGAAGGAAAATGTCATCATCAAAGCTTCTGTTTGCTGTGATGATCGGCCAGAACTGTTCCCTGAGATCATTCAAGTCCTCAAAGGGTTGAGACTCACAGCAGTCAAAGCTGACATAACCAGTGTTGGTGGCAGAATCAAAAGCATATTGGTGCTTTGCTCAAAGAACAGTGAAGAGGGTGGTGCTGTTTGTCTTAGCACTGTTAAACAATCCCTTAAATCAGCTGTGAACAAAATTGCTTCTCTATCTGTGGCATCAAATTGTCCCACTAGAAGTAAGAGGCAGAGGTTCTTCTTGCCTTCTCATTTGGTACAATAA 774 0.4302 MENYYYSGWPLATNWAQCNSAPNSDESPFSVPTQLLPLATDSASLQFGEFPSWPVAVPIENRAASASNSHSQAEKRRRDRINAQLATLRKLIPKSDKMDKAALLGSVVDHVKDLKRKALDVSKVNTVPTEIDEVTIDYHSAQDESNYNSRNIVKENVIIKASVCCDDRPELFPEIIQVLKGLRLTAVKADITSVGGRIKSILVLCSKNSEEGGAVCLSTVKQSLKSAVNKIASLSVASNCPTRSKRQRFFLPSHLVQ 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi308g00068 257 CDD ACT_UUR-ACR-like 162 197 - -
Sebi308g00068 257 Gene3D - 60 122 IPR036638 GO:0046983
Sebi308g00068 257 CDD bHLH_AtAIG1_like 60 137 - -
Sebi308g00068 257 PANTHER TRANSCRIPTION FACTOR BHLH30 57 252 IPR045847 GO:0003700|GO:0006355
Sebi308g00068 257 SMART finulus 71 120 IPR011598 GO:0046983
Sebi308g00068 257 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 65 114 IPR011598 GO:0046983
Sebi308g00068 257 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 66 118 IPR036638 GO:0046983
Sebi308g00068 257 Pfam Helix-loop-helix DNA-binding domain 68 114 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi308g00068 Sebi-Chr308 1101292 1102480 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi308g00068 1 254 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G40200 43.774 2.76e-54 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Sebi308g00068 HLH 7.8e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi308g00068 - - gmx:100306102 404.06