Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi308g00067 ATGTCGAACCACGACGCTCAAGCTTTCAATTGGCACTACAACGCAGAACTTGACGAGGAAAACTTCGTAATCCGTGGCCGGAAACTCTTCTTCATCATCGTCCTCTTCGCCATTATCCTCATATTCACCGCTCTCTTCATCTGCGCTCGCTGGATCTGCCGCCGACACCACGACCTTCTCCCGACGGCGTTCCACGCGCCGGTGATGGCTTCTTCGACGCCGTTGTCGCAGGGACTCGACGCCGACACGATCAAGAAGCTACCGATTATACTGCATCAGGCATCGCCGTCGTGTGGTCCGAATCAGGAAAGAGAGTGCTGCATCTGCTTGAGCGCGTTCAGAGATGGCGAGAAGTTGAAGGTTCTGCCTGGATGTGACCATTGCTTCCATTGCGAGTGCGTTGATGAGTGGCTTGCGAATCACTCAAGTTGCCCTCTCTGTAGAGCTTCTCTCAAGCTCGATTCCTCGTTCCCTGAGATTTTGATCCAAGAACCACCGATTAGATATAGTCTCAGATTCTGA 522 0.5268 MSNHDAQAFNWHYNAELDEENFVIRGRKLFFIIVLFAIILIFTALFICARWICRRHHDLLPTAFHAPVMASSTPLSQGLDADTIKKLPIILHQASPSCGPNQERECCICLSAFRDGEKLKVLPGCDHCFHCECVDEWLANHSSCPLCRASLKLDSSFPEILIQEPPIRYSLRF 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi308g00067 173 FunFam RING-H2 finger protein ATL66 71 153 - -
Sebi308g00067 173 SUPERFAMILY RING/U-box 101 154 - -
Sebi308g00067 173 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 30 155 - -
Sebi308g00067 173 CDD RING-H2_EL5-like 105 148 - -
Sebi308g00067 173 SMART ring_2 106 147 IPR001841 -
Sebi308g00067 173 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 68 153 IPR013083 -
Sebi308g00067 173 ProSiteProfiles Zinc finger RING-type profile. 106 148 IPR001841 -
Sebi308g00067 173 Pfam Ring finger domain 105 148 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi308g00067 Sebi-Chr308 1073290 1073811 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi308g00067 11 156 C3H Transcription Factor Family AT3G11110 42.105 1.83e-31 109
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi308g00067 - - gmx:100794554 215.698