Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi308g00060 ATGAATGATGTTGTATCCTCAATGATGATCTCTTCAGGCTTGTTACCAACTGGTTCTTTGCTAGATTCTTTGATTCAGATATCCAATGAAGTTGGCTCAATGGAGAAGTTTCCCTTCATACACACAAGGAATGTTTCATCCATGATAAGGAGGATCAAGCTTCTTTCTTCTTTATTTGAAGAGATTCAAGAAACAAATACTCCACTTCCTCCTTCTTCAATCCTGTGCTTCACAGAACTCTTCTCTGTGATCACAAGAGTGAAGGTTTTGATCCAAGAGTGCAAGGATGGAAGCTCTCTTTGGGGTCTAATACAGTTAGAGTTCATTTCCAACCAATTTTATGTGCTTGTAAAAGAGATGGGAAGGGCCCTTGATATCTTGCCTCTGAGTTGGCTTAATATAACAGCAGATATAAGAGAGCAAGTGGAGCTTCTGCAGAAACAGACAAAGAGGGCTGAGTTACTCATTGATCCTAGAGAGCTTCAAAGAAGAGAAAAGCTTCTACAAGTAATGGCCAACAACAGTTTACAAAACAAGAAGAACAAAGGGTTCATTGATTTTGGGAAAGTTGAAGAGATATTAAGCAGCATTGGTTTGAAAACCCAATCAGATTATGATGGAGAAATATCCAAGTTAGAGGCTGAAGCTCAGAATCAGGCAGGTACTGGAGGACTAATTGTTGTGTCCAATATAAACAATCTCATATCTTTGGTTTCATATTCCAAATCCATGATATTCAGAAAAGGAGAAAATAATAGAGATGAAGAAGATTGCAAGCCACTATCTATATTTTTATCATGTAACAAAATTCATGATAGTTCTTCATCTTCTCAGTCCATGTCATTGACACCTAATATTCCTGATGAATTTCGTTGCCCAATTTCACTTGACTTAATGAGGGACCCTGTGATTGTATCATCAGGTCACACTTATGACAGAAATTCAATTGCACAGTGGATAAACTCAGGGCATCACACTTGCCCCAAAAGTGGTCAAAGGCTAATTCACACTGCTCTAATACCAAACTATGCATTAAAAAGCCTTGTTCATCAATGGTGCTATGAAAACAATGTCCCAGTGAATGAGCCTACAACTTCCCTTTCAGAGGGAAACAACAACAGCAAGAAGAACACGAATGACAAGGCTATTGATCATATTTCTGCAAGCAAAGCAGCTTCAGATGCTGTCAAAATGACAGCAGAATTCCTAGTTGGAAAATTAGCAACTGGTTCAGCTGATATCCAAAGACAAGCTGCATATGAACTTAGATTACTTGCAAAAACAGGCATGGATAATAGAAGAGTCATAGCTGAGGTAGGGGCTATTCCATTTCTTGTAACACTCCTAGGATCACAAGATTCAAGAATCCAGGAACATGCAGTGACAGCCTTGTTCAACCTCTCTATCTATGACAACAACAAGATTTTGATCATGTCAGCTGGAGCAGTTGATAACATAGTACAAGTACTTGAATCAGGGAAGACAATGGAAGCAAGAGAGAATGCTGCAGCAACAATATTTAGCTTATCTATGGTAGATGATTGTAAAGTACAAATTGGAGCAAGTCCAAGGGCAATACAAGCATTAGTTGGACTTCTTAAAGAAGGTACCCCAATTGGGAAAAGAGATGCTGCAACTGCATTATTCAATCTTGCAGTTTACAATCCAAACAAGGCAAGCATTGTTAAAGCTGGGGCAGTTACTTTGTTGGTTGAGTTGTTGATGGATGATAAGGCTGGCATAACAGATGATGCACTAGCTGTGCTTGCTGTGCTTCTAGGTTGTTCTCAAGGACTAGAAGAGATAAGGAATAGTAGAGCATTGGTGCCACTTCTTATTGATCTTTTGAGATTTGGGTCAGTGAAAGGGAAGGAAAATTCAATAACACTTTTACTAGGATTGTGCAAAGAAGAAGGGGAATTAGTGGCAAGGCGTCTATTGGCAAATCCAAGGAGTGTTCCTTCTCTTCAGAGTTTGGCTGCTGATGGTTCTTTGAGAGCTAGAAGAAAAGCTGATGCATTGCTTCGGTTACTCAATAGGTGTTGCTCTCAACCTCATCATTCTGTGTGA 2070 0.3932 MNDVVSSMMISSGLLPTGSLLDSLIQISNEVGSMEKFPFIHTRNVSSMIRRIKLLSSLFEEIQETNTPLPPSSILCFTELFSVITRVKVLIQECKDGSSLWGLIQLEFISNQFYVLVKEMGRALDILPLSWLNITADIREQVELLQKQTKRAELLIDPRELQRREKLLQVMANNSLQNKKNKGFIDFGKVEEILSSIGLKTQSDYDGEISKLEAEAQNQAGTGGLIVVSNINNLISLVSYSKSMIFRKGENNRDEEDCKPLSIFLSCNKIHDSSSSSQSMSLTPNIPDEFRCPISLDLMRDPVIVSSGHTYDRNSIAQWINSGHHTCPKSGQRLIHTALIPNYALKSLVHQWCYENNVPVNEPTTSLSEGNNNSKKNTNDKAIDHISASKAASDAVKMTAEFLVGKLATGSADIQRQAAYELRLLAKTGMDNRRVIAEVGAIPFLVTLLGSQDSRIQEHAVTALFNLSIYDNNKILIMSAGAVDNIVQVLESGKTMEARENAAATIFSLSMVDDCKVQIGASPRAIQALVGLLKEGTPIGKRDAATALFNLAVYNPNKASIVKAGAVTLLVELLMDDKAGITDDALAVLAVLLGCSQGLEEIRNSRALVPLLIDLLRFGSVKGKENSITLLLGLCKEEGELVARRLLANPRSVPSLQSLAADGSLRARRKADALLRLLNRCCSQPHHSV 689
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi308g00060 689 Gene3D - 371 539 IPR011989 -
Sebi308g00060 689 Pfam Armadillo/beta-catenin-like repeat 431 468 IPR000225 GO:0005515
Sebi308g00060 689 SMART arm_5 512 553 IPR000225 GO:0005515
Sebi308g00060 689 SMART arm_5 595 636 IPR000225 GO:0005515
Sebi308g00060 689 SMART arm_5 554 594 IPR000225 GO:0005515
Sebi308g00060 689 SMART arm_5 470 511 IPR000225 GO:0005515
Sebi308g00060 689 SMART arm_5 429 469 IPR000225 GO:0005515
Sebi308g00060 689 Pfam U-box domain 286 356 IPR003613 GO:0004842|GO:0016567
Sebi308g00060 689 SUPERFAMILY RING/U-box 275 360 - -
Sebi308g00060 689 SMART Ubox_2 289 352 IPR003613 GO:0004842|GO:0016567
Sebi308g00060 689 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 524 566 IPR000225 GO:0005515
Sebi308g00060 689 ProSiteProfiles U-box domain profile. 285 359 IPR003613 GO:0004842|GO:0016567
Sebi308g00060 689 FunFam RING-type E3 ubiquitin transferase 285 359 - -
Sebi308g00060 689 Gene3D - 541 681 IPR011989 -
Sebi308g00060 689 SUPERFAMILY ARM repeat 401 678 IPR016024 -
Sebi308g00060 689 CDD RING-Ubox_PUB 287 339 IPR045210 -
Sebi308g00060 689 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 285 361 IPR013083 -
Sebi308g00060 689 FunFam RING-type E3 ubiquitin transferase 384 684 - -
Sebi308g00060 689 PANTHER U BOX DOMAIN-CONTAINING 43 683 - -
Sebi308g00060 689 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 440 482 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi308g00060 Sebi-Chr308 945594 947663 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi308g00060 18 684 U-box Gene Family AT3G46510 37.761 4.03e-133 405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi308g00060 - - gmx:100793498 1118.22