Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi308g00056 ATGAGCAAGAACGTGAAATCCAGTCCGCTCAGGGATCATTGTGGAGCTTTGCGCTTTGTGGCGGTGTGCTTGTTGTTTCTGAACCTGGGTTTGTGCTGTTCTTTGAATGAAGAAGGTAACACTCTTTTGAAATTGAAGCAGAGAATAATGAGTGACCCTTTTGATGCTCTGTCAAATTGGATTGATGATGAAGCAGTTGTTGACCCGTGTAATTGGTTCGGAGTTGAGTGCTGTGATGGAAAAGTTGTGGTCTTGAATTTGAAAGATCTCTGCCTTGGAGGAACTCTAGCACCTGAGCTTGTGAACCTTATTCACATAAAGTCTATCATATTGCGGAACAACTCTTTCTCTGGGACCATCCCTGAAGGAATTGTAGATTTGAAAGAATTGGAGATTTTGGATTTGGGATACAACAACTTCAGTGGACAAGTACCTGAAAGTCTTGGGAGTAATATCTCACTGGCAATCCTTTTGCTGGACAACAATGAGCTTCTTGTTGGTTTCTCTCCCGAAATCAATGAACTGAAGATGCTTTCTGAATGTCAAGTAGATGAAAACCAGCTAACTAATGCAGATAAGATGCCAGCTTGTACAGAAAGATCCATCACATGGCATGTTGGTCAAAATAAAGTTACTCGGAGCCTACTGGAAAATCATTCCACAGATAGTAGTTCCCGTCAAGGCCCCAAACTGAAACATAATCCAAAATCTCCTCCTCCGCATCAAAAATCTCCTCCTCCGCATAAAAAATCTCCTCCTACGCAACCAGGCCCTCTTAATGGTGAGGTTAATCCACCTCTAAATAGGCCTTCTCCTTCTGGTTCCCCACCACCAGTACCAAAGTCAGTTCCATCTAGTCAAAATGATTCTCCTAATGTCATGTCTAAACCAGGTTCTGGAGCACCATCTAAGGCTCCACCTAAAAGCACCTCATCAAAGAAACATGTAATCCCTATTTTGGCTGGAATTATAGGTGGTGCTGTATTTCTTCTTTTTTCAAGCATTGGTATATATCTTTGTATAACCAACAAGGTAGCTAATGTCAGACCTTGGGCTACTGGACTAAGTGGACAGCTTCAGAAGGCATTTGTGACTGGTGCGCCAAAACTAAAGAGATCAGATCTTGAAGCAGCATGTGAAGATTTTAGTAATGTAATTGGTAATTCACCTATTGGTACATTGTACAAGGGAACTTTGTCTAGTGGCATTGAAATATCTGTAGCTTCTCTTCCGGTAACATCATCCAAGAATTGGTCAAAGATTTTAGAAGCTCAATTTAGGAAGAAGATAGATACATTATCAAAAGTGAACCACAAAAATTTTGTCAATCTTATTGGATATTGTGAAGAAGAGGAGCCTTTCACCAGAATGTTGGTTTTTGAATACGCCCCAAATGGAACACTATTTGAGCACTTACACATAAAAGAAGCTGAGCACTTGGATTGGATAACAAGACTTAGAGTTGCAATGGGCATGGCTTACTGCCTGCAACATTTGCACCAGTTGGACCCTCCTTTGACTCTTACCAACTTGAATTCTTCAGCTGTCTACCTTACTGATGACTATGCAGCCAAAATCTCAGACATGAGTTTCTCTATTGAAACAGCTTCATCTGATCAGACAAAAGCTGGGGCTAGAAAAGACACTGACATGCCATTAGCAAGTCCAGAAAGTAATGTCTATAGCTTTGGTGTTTTATTGTTTGAAATGGTCACTGGTCGTCTCCCTTATTCAGCAGATAATAGCTCACTTGAAAACTGGGCATCACACTATTTACAAGGAGGGGACCAGCAACCCCTCAAAGAAATGGTGGATCCAATTCTAGCATCTTACCAAGAAAATCAGCTGGAACAAGTTGCTGCATTGATTAAATCTTGTGTGCATCCTGAGTCAGAGCAGAGACCAACAATGAAAGAAGTGAGTGAGAGATTGAGAGAGATAACAAAAATAACACCTGAATCAGCAGTTCCAAAACTTTCTCCACTTTGGTGGGCAGAGGTTGAGATTTCTTCTGTAGAAGCAGGCTGA 2028 0.4122 MSKNVKSSPLRDHCGALRFVAVCLLFLNLGLCCSLNEEGNTLLKLKQRIMSDPFDALSNWIDDEAVVDPCNWFGVECCDGKVVVLNLKDLCLGGTLAPELVNLIHIKSIILRNNSFSGTIPEGIVDLKELEILDLGYNNFSGQVPESLGSNISLAILLLDNNELLVGFSPEINELKMLSECQVDENQLTNADKMPACTERSITWHVGQNKVTRSLLENHSTDSSSRQGPKLKHNPKSPPPHQKSPPPHKKSPPTQPGPLNGEVNPPLNRPSPSGSPPPVPKSVPSSQNDSPNVMSKPGSGAPSKAPPKSTSSKKHVIPILAGIIGGAVFLLFSSIGIYLCITNKVANVRPWATGLSGQLQKAFVTGAPKLKRSDLEAACEDFSNVIGNSPIGTLYKGTLSSGIEISVASLPVTSSKNWSKILEAQFRKKIDTLSKVNHKNFVNLIGYCEEEEPFTRMLVFEYAPNGTLFEHLHIKEAEHLDWITRLRVAMGMAYCLQHLHQLDPPLTLTNLNSSAVYLTDDYAAKISDMSFSIETASSDQTKAGARKDTDMPLASPESNVYSFGVLLFEMVTGRLPYSADNSSLENWASHYLQGGDQQPLKEMVDPILASYQENQLEQVAALIKSCVHPESEQRPTMKEVSERLREITKITPESAVPKLSPLWWAEVEISSVEAG 675
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi308g00056 675 FunFam Nuclear pore complex protein NUP107 35 193 - -
Sebi308g00056 675 Pfam Leucine rich repeat N-terminal domain 36 77 IPR013210 -
Sebi308g00056 675 PANTHER PROTEIN MALE DISCOVERER 2 17 673 - -
Sebi308g00056 675 SUPERFAMILY L domain-like 39 192 - -
Sebi308g00056 675 MobiDBLite consensus disorder prediction 217 312 - -
Sebi308g00056 675 SUPERFAMILY Protein kinase-like (PK-like) 374 664 IPR011009 -
Sebi308g00056 675 MobiDBLite consensus disorder prediction 233 284 - -
Sebi308g00056 675 MobiDBLite consensus disorder prediction 217 231 - -
Sebi308g00056 675 Gene3D Ribonuclease Inhibitor 36 202 IPR032675 -
Sebi308g00056 675 ProSiteProfiles Protein kinase domain profile. 380 648 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi308g00056 675 Pfam Protein tyrosine and serine/threonine kinase 383 644 IPR001245 GO:0004672|GO:0006468
Sebi308g00056 675 Gene3D Phosphorylase Kinase; domain 1 353 462 - -
Sebi308g00056 675 FunFam Inactive receptor-like serine/threonine-protein kinase 354 462 - -
Sebi308g00056 675 Gene3D Transferase(Phosphotransferase) domain 1 463 656 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi308g00056 Sebi-Chr308 920593 924850 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi308g00056 19 648 Receptor kinase-like Gene Family AT1G66830 25.352 6.81e-45 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VI-2 Sebi308g00056 PK_Tyr_Ser-Thr 5.1e-25 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi308g00056 - - gmx:100820416 911.753