Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi308g00049 ATGGGATATATGGGCCATGCAGCCCATGACCCAGTGTTGCCCGAGGCCGAGATTAGGGTTTATCAACCTCTCTCCTTAAAGAGCCGCTTCTCCTCTTTCAGGTTTTCAGTTTGCTGCCTTGGTTGGAGTGGAGCACTTGCTTGGTTCCGAAATCTAAAAATGGCGCGAGGATTGAAGAAGCATTTGAAGAGGCTCAATGCCCCAAAGCATTGGATGCTTGACAAACTCGGTGGTGCATTTGCTCCTAAGCCGTCTTCTGGACCACACAAGTCTAGGGAATGCCTCCCACTCATTCTCATCTTGCGAAACCGGCTGAAGTATGCTCTGACATACCGTGAAGTCATTGCAATTCTGATGCAGCGCCATGTCCTTGTTGATGGCAAAGTCAGGACAGACAAAACATATCCAGCTGGTTTTATGGATGTTGTATCCATTCCTAAAACAAATGAGAACTTCCGCCTGCTGTATGACACCAAAGGCCGATTCCGTCTCCACTCAGTTAGGGATGACGAGGCGAAGTTCAAGCTCTGCAAGGTTCGTTCAATTCAATTTGGCCAAAAGGGTATCCCATACTTGAACACCTATGATGGTCGCACAATCCGCTACCCAGATCCTTCCATCAGGGCTAATGACACCATTAAGCTTGATCTAGATGAAAACAAGATTGTTGATTTCATCAAATTTGATGTTGGGAATGTAGTTATGGTAACAGGTGGAAGGAACAGGGGGCGTGTTGGAGTGATCAAGAACAGGGAGAAGCATAAGGGAAGCTTTGAGACAATCCACGTTCAGGATGCCACTGGACATGAATTTGCAACTCGTATGGGCAATGTGTTCACTATTGGCAAGGGGACAAAACCATGGATATCTCTTCCCAAGGGTAAGGGTATTAAGTTATCAATCATTGAGGAAGCTAGGAAAAGGATTGCTGCTCAACAAGCAACTGCTGCTTAA 954 0.4633 MGYMGHAAHDPVLPEAEIRVYQPLSLKSRFSSFRFSVCCLGWSGALAWFRNLKMARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDDEAKFKLCKVRSIQFGQKGIPYLNTYDGRTIRYPDPSIRANDTIKLDLDENKIVDFIKFDVGNVVMVTGGRNRGRVGVIKNREKHKGSFETIHVQDATGHEFATRMGNVFTIGKGTKPWISLPKGKGIKLSIIEEARKRIAAQQATAA 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi308g00049 317 Gene3D - 175 225 IPR038237 -
Sebi308g00049 317 PANTHER 30S/40S RIBOSOMAL PROTEIN S4 54 307 IPR000876 GO:0003735|GO:0005840|GO:0006412
Sebi308g00049 317 SMART kow_9 227 254 IPR005824 -
Sebi308g00049 317 CDD KOW_RPS4 228 282 IPR041982 -
Sebi308g00049 317 FunFam 40S ribosomal protein S4 54 170 - -
Sebi308g00049 317 ProSitePatterns Ribosomal protein S4e signature. 61 75 IPR018199 -
Sebi308g00049 317 Gene3D - 228 298 IPR014722 -
Sebi308g00049 317 FunFam 40S ribosomal protein S4 175 225 - -
Sebi308g00049 317 Pfam KOW motif 230 263 IPR005824 -
Sebi308g00049 317 FunFam 40S ribosomal protein S4 228 298 - -
Sebi308g00049 317 Hamap 30S ribosomal protein S4e [rps4e]. 60 291 IPR000876 GO:0003735|GO:0005840|GO:0006412
Sebi308g00049 317 Pfam S4 domain 100 143 IPR002942 GO:0003723
Sebi308g00049 317 ProSiteProfiles S4 RNA-binding domain profile. 95 157 - -
Sebi308g00049 317 CDD S4 104 165 - -
Sebi308g00049 317 Gene3D - 54 170 IPR036986 GO:0003723
Sebi308g00049 317 Pfam RS4NT (NUC023) domain 56 92 IPR013843 -
Sebi308g00049 317 Pfam Ribosomal family S4e 148 222 IPR013845 -
Sebi308g00049 317 Pfam 40S ribosomal protein S4 C-terminus 265 311 IPR032277 -
Sebi308g00049 317 SMART s4_6 95 159 IPR002942 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi308g00049 Sebi-Chr308 809070 811425 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi308g00049 54 314 Cytoplasmic Ribosomal Protein Gene Family AT5G58420 91.571 0.0 509
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi308g00049 K02987 - gmx:100795220 507.294