Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi308g00041 ATGAACAGAAAAAGGCGTCTAAATCAGTTGAAGTCTCCATTCGATTCTTACCCCTTTGAAGCAGTTATCTTTGGCTCATGGAAAGCAGTGGAGTTCATAACAATCGAGTCAGGAACTATGACTGTACATTTTATAGATAATCACCACATGGCTATGCAGAAAGGCCCCTTGTCAGATGTTCGAACAAGGTCAAGGAAAGCTACTTCATCAGATTGCTCCTGTTTTTTACGTCCGGGAATTGACATATGTGTGCTAGCAGCCCCTCAACGTACTGATAATTCAGATGAATTTGGTCTCAAGCCTGTTTGGCTTGATGCTAAAATAAGTTCTATACACAGACAGCCCCATGAATCTGAGTGCGCATGTGAGTTTTATGTCAACTTTTATGTTAATCAAGGTTCACTTGGTGCAGAGATAAGAACTCTTAATAAGGAGATTAAAGTAGTTGGAATCAATCAAATCTCTATCCTCCAAAGACTTGAACATAATCCTTGTGAAGAACAGCACTACCGGTGGGCTTCATCTGAGGACTGCTCTGCAATATCACACACTAAATTCCTTTTGGGAAAATTTTTGACCGATATATCATGGTTAGTTGTGGCATCTGTTTTAAAGAAGGTTTCATTCTGTGTAAGATCTGTAGAAAACAAGCTCGTGTATCAAATTTTGGAAAGAGGTGTTATTAGCACTCCATTGAATGCTGAGTCTCATATAAATGTTGTGAATTTCAAAGTAGACAATGGCATGTTAATACCCATTGTTTCTCAAGTTGCTATAACTGGCACCAAGAGGGCTGATCGTGATCATGCACATGAATCCCATGAAGATAAAATGTCGCCATCTTATAATGTTGAGGGCTTACGGCGTTCCAAACGCCGGCATGTACAACCTGAACGTTACCTTGGTTGTGATGTTCCTGAGCTTGATGTTGGTTCTTTCAGAAACAGGCCACCAGTTAAGATAGACACATGGAAAGATGATGAATTGTCATTGCCATTATCATCCCTGTTTGGTTTGCAGCAAAACTGTCCAGAAAAGAATGCTGACAACTGTCAAAAGGTCAACAAGGTGAAAACCTGCCGGGAGCTTCTGGTGTACAATAGGAGGAAGGGTAAAAACAGAAAGATAAATTCAGGTGATGATGATCAAAATGAACATCAAAATCAACTTGCTATTATTCCTCTTCCTGATCATGGCAATCCAATAGCTGTTGAGCATAGTGATCTAACTGACAAGGTTGCTAGAAGTTCTGAACATGAATCTACTGAAATGTCTTCCAAATATTATCATCTGGTTAATAAACCTAAACCAAACAAAAACAATATTGGTTTGTTAACTCTTGAGCCTGCAAAGTCAGATGACGCAGGGAAGAATGATGATCTTTCTTTGAGATACCATTACAGTTATGGCACCCCTAAGTTACAGAAAAAGAGTTTATGTGATTTGGATGATATGGATCTTGGAAATAAATGGGGAGGGGTAAAATCTAATAAAGGACCTAAAGAGAGAACATATCGTTCAACATTCTCAACAAGTAGAAAATATGGCGAAGAAAGAACTTATAAAGACAGGACCTTAAAGGGATCTGCCTACCAGGATTTGATAAATTTATACCTCAAGAATATTGATACAAGGCCAGACACAGAAGAAACGCCTATTCAGGACCAGTGGAAGCAATGCAACACAACAAGCAGTTTTGGACAAGAGAGAGAAACAGAGACAACACATACAAAGGATGCAGGAGAAGAATCTGAAAACGAAATGTTGTGGAGAGAATATGATATGGCATTGGCATCACTTTATATTGAAGAAGGCATAGAGGGCTCAAATGCTGCCAATGAGGAAAAATCGAAAAACGTTTGTGAGCATGATACTAGATTGGATGAACAACTTGGAATATACTGCCTTAAATGTAATGTTGTGATCACCGAGATCCGAGATGTCATGGCACCCTTTGCTAAACAACATAGTACAGTGTGGTACCCAGAGGAGAAGCAGTGTGCTGGAGAAGAGGCAGAGGCCAAAGCTGATGAAGATGGTGATATCAATCTTTTCTCAACTAGTGCTTCTCCTGATGAACCTATATCTGAAGAGAATGATAATGTTTGGGCATTAATTCCCGAACTCAGAAAAAAGTTGCATGTCCACCAAAAGAAAGCTTTTGAGTTTCTTTGGCAAAATATTGCAGGGTCTACAAATCCAAGACTTATGGATGCTGAATCTGAAAACAGAGGTGGCTGTGTGATATCTCATTCTCCTGGAGCTGGAAAAACTTTTCTCATTATTGCTTTTCTCGTTAGCTACTTGAAGTTATTCCCAGGGAAGAGACCACTAGTCCTTGCTCCAAAAACAACACTGTATACTTGGTATAAAGAATTTATCAAGTGGGAGATTCCTATACCAGTGTATCTGATTCATGGTCGTAGAACCTACAGGGTATTCAAGCAGAAATCAATCGATATTCCTGGAATTCCCAAGCCCACTGATGATGTCAAGCATGTTTTGGATTGCCTGGAGAAGATACAAAAATGGCACTCACAACCGAGTGTTCTAATCATGGGCTATACTTCATTTTTAACATTAATGCGAGAGGATTCAAAGTATGCACACAGGAAGTTTATGGCTAAAGTATTGAGGGAAAGTCCTGGGATCCTGGTGCTGGATGAAGGGCACAATCCTAGAAGCACTAAATCAAGGTTGAGAAAAGTTTTGATGAAAGTACAGACAGAATTGAGAATATTACTTTCAGGTACTTTGTTTCAGAACAATTTCTGTGAATACTTCAACACTCTCTGCTTGGCAAGACCAAAATTTGCTCATGAAGTACTGCAAGCATTAGACCCAAAATACAGGAGAAAAAGGAAAGGAACAGAAAAATCACGTAATTCAATAGAGTCACGGGCTAGGAAATTCTTCTTAGACACAATTGCTAAGAAAATTGACTCAAATATTGGTGATGAGAGGATGCAAGGTCTAAACATGTTGAGAAATGTGACAAATGGTTTTATAGATGTTTATGAAGGTGGGAGTTCTGATGGTCTACCTGGTTTACAAATTTATACATTGCTAATGAATACAACTGATATACAGCAGGAGATTTTACAGAAACTGCACAAGAAAATGGCTAAGTGCAATGGATACCCTCTTGAGTTAGAGCTTTTGATAACCCTTGGATCAATACATCCTTGGTTGGTCAAAACAGCTGTATGTGCTGAGAAGTTTTTCACTAAGGAACAACTGGTTGAGCTAGATAATTGGAAGTATGATTTGAAAATAGGGTCAAAAAATGAGAAGGTTCTTATCTTCTGCCACAACATTGCACCTGTCAAATTATTTCTAGAATATTTTGAGAGGTACTTACACTGGCAAAGAGGCCGGGAGGTTTTGGTACTAACTGGGGAATTAGAGCTCTTTGAACGTGGGAGAATAATGGATAAGTTTGAGGAACCTGGTGGAGTATCTAAGATACTCCTTGCTTCAATCACAGCTTGTGCTGAAGGCATTAGTTTGACAGCAGCTTCTCGTGTCATTATGTTGGATTCAGAGTGGAACCCTTCAAAAACAAAGCAGGCTATTGCGCGGGCCTTTCGTCCTGGTCAGCAAAAAGTTGTTTATGTGTATCAGCTTTTGGTGACAGGTTCATTGGAGGAGGATAAATATAGAAGAACCACTTGGAAAGAGTGGGTATCAAGCATGATTTTTAGTGAGGCCTTTGTGGAGGACCCTTCTAAATGGCAAGCTGAGAAGATTGAAGATGATATACTAAGAGAAATGGTTGCGGAGGACAGGTCAAAAGTATTCCATATGATAATGAAGAATGAGAAAACTTCAACAAACAAATGA 3843 0.3924 MNRKRRLNQLKSPFDSYPFEAVIFGSWKAVEFITIESGTMTVHFIDNHHMAMQKGPLSDVRTRSRKATSSDCSCFLRPGIDICVLAAPQRTDNSDEFGLKPVWLDAKISSIHRQPHESECACEFYVNFYVNQGSLGAEIRTLNKEIKVVGINQISILQRLEHNPCEEQHYRWASSEDCSAISHTKFLLGKFLTDISWLVVASVLKKVSFCVRSVENKLVYQILERGVISTPLNAESHINVVNFKVDNGMLIPIVSQVAITGTKRADRDHAHESHEDKMSPSYNVEGLRRSKRRHVQPERYLGCDVPELDVGSFRNRPPVKIDTWKDDELSLPLSSLFGLQQNCPEKNADNCQKVNKVKTCRELLVYNRRKGKNRKINSGDDDQNEHQNQLAIIPLPDHGNPIAVEHSDLTDKVARSSEHESTEMSSKYYHLVNKPKPNKNNIGLLTLEPAKSDDAGKNDDLSLRYHYSYGTPKLQKKSLCDLDDMDLGNKWGGVKSNKGPKERTYRSTFSTSRKYGEERTYKDRTLKGSAYQDLINLYLKNIDTRPDTEETPIQDQWKQCNTTSSFGQERETETTHTKDAGEESENEMLWREYDMALASLYIEEGIEGSNAANEEKSKNVCEHDTRLDEQLGIYCLKCNVVITEIRDVMAPFAKQHSTVWYPEEKQCAGEEAEAKADEDGDINLFSTSASPDEPISEENDNVWALIPELRKKLHVHQKKAFEFLWQNIAGSTNPRLMDAESENRGGCVISHSPGAGKTFLIIAFLVSYLKLFPGKRPLVLAPKTTLYTWYKEFIKWEIPIPVYLIHGRRTYRVFKQKSIDIPGIPKPTDDVKHVLDCLEKIQKWHSQPSVLIMGYTSFLTLMREDSKYAHRKFMAKVLRESPGILVLDEGHNPRSTKSRLRKVLMKVQTELRILLSGTLFQNNFCEYFNTLCLARPKFAHEVLQALDPKYRRKRKGTEKSRNSIESRARKFFLDTIAKKIDSNIGDERMQGLNMLRNVTNGFIDVYEGGSSDGLPGLQIYTLLMNTTDIQQEILQKLHKKMAKCNGYPLELELLITLGSIHPWLVKTAVCAEKFFTKEQLVELDNWKYDLKIGSKNEKVLIFCHNIAPVKLFLEYFERYLHWQRGREVLVLTGELELFERGRIMDKFEEPGGVSKILLASITACAEGISLTAASRVIMLDSEWNPSKTKQAIARAFRPGQQKVVYVYQLLVTGSLEEDKYRRTTWKEWVSSMIFSEAFVEDPSKWQAEKIEDDILREMVAEDRSKVFHMIMKNEKTSTNK 1280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi308g00041 1280 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1082 1246 IPR001650 -
Sebi308g00041 1280 MobiDBLite consensus disorder prediction 668 696 - -
Sebi308g00041 1280 MobiDBLite consensus disorder prediction 264 289 - -
Sebi308g00041 1280 Pfam SNF2-related domain 710 986 IPR000330 GO:0005524|GO:0140658
Sebi308g00041 1280 MobiDBLite consensus disorder prediction 571 585 - -
Sebi308g00041 1280 Gene3D - 687 980 IPR038718 -
Sebi308g00041 1280 SMART helicmild6 1114 1199 IPR001650 -
Sebi308g00041 1280 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1012 1263 IPR027417 -
Sebi308g00041 1280 Pfam Helicase conserved C-terminal domain 1091 1198 IPR001650 -
Sebi308g00041 1280 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 738 937 IPR014001 -
Sebi308g00041 1280 MobiDBLite consensus disorder prediction 563 585 - -
Sebi308g00041 1280 SMART ultradead3 709 945 IPR014001 -
Sebi308g00041 1280 CDD SF2_C_SNF 1091 1210 - -
Sebi308g00041 1280 Gene3D - 1071 1271 IPR027417 -
Sebi308g00041 1280 CDD DEXHc_ATRX-like 713 944 - -
Sebi308g00041 1280 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 52 1278 IPR044567 GO:0080188
Sebi308g00041 1280 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 698 939 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi308g00041 Sebi-Chr308 653344 658684 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi308g00041 1090 1217 RAD5 or RAD16-like Gene Family AT5G43530 35.156 4.35e-12 69.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Sebi308g00041 SNF2_N 1.1e-17 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi308g00041 K10875 - gmx:100811703 1900.18