Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi308g00040 ATGGGTGCTGCTTATGATCAAGGTTCTAACAAATCTCTTGTGTCAATGGATTCTTCTAGAAAGAGGAAAAGTAGGAGCAGAGGGGATGGGACTAGATCCGTGGCTGAGACTCTGGCAAAATGGAAGGAGTACAATGAGCATCTTTATTCTTCTGGTTCTGGCAAAAGTGATGGTAAACCAACTCGTAAAGCCCCAGCCAAGGGTTCAAAGAAAGGGTGTATGAAAGGTAAAGGAGGACCCCAAAACTCTCAGTGTAACTACAGAGGTGTTAGGCAGAGAACATGGGGAAAATGGGTTGGTGAGATTCGGGAACCAAATAGAGGAAGTAGGCTTTGGTTAGGTACTTTCTCTACTGCACAAGAAGCTGCTCTTGCATATGATGAAGCTGCTAGGGCCATGTATGGTCCTTGTGCACGCCTCAATTTTCCTCACATCTCAGATTATACTTCTATTAGAGAACAGTTGAAGGAATCTTCCTCGGCGGGTGGAACATGTTCTTGTTCTTCTGTTGCAACTCCTGCAACCTCTGACACAACTACTATATCCAATCAATCCGAGGTTTGTGCAGCTGAGGATGTTAAGGAGAAACCTCGACCTGTCAATACCAACAATACTGTTAATGTTAATGTTTGTCATCAAGTTTATGAATCTGGATCACCAACTAGTAAAATGAAGCAAGTGCCGAAGGATGAGCCTGTGGATCTCACAGATGACCCTGCATCTTGGGAAATCCAAGATATCTTCAAACCTGAAAGAACACATGATGAAGGGAAGGTTGGTGAGGATGTATGTATAGATCAGATGGATTTTTCATGGATTGATAACATTGATTTTAATGGTGATTACTTGAAGAGCTTCTCCACGGATGAGTTATTTCAAGTGGATGAACTTTTGGGGCATATAGACAACAATCCGATTGATAACTCTGGATTGATGCAAGGTTTGGATTTTGGACTAATGAGCTTTCCTGAAGAAAGTAATCCTCAGGCTGAGACACCTTCAAGCTTTATGTATCAATTGCAAAATCCAGATGCTAAGCTGCTGGGAAGTTTGCCACACATGGAACAAACACCATCTGGTGTTGATTATGGATTGGATTTCCTAAAAACAGAAGAGGCAGGGGACTATAATGGTGGAGGTGAAGAGTCAAGATTTCTTAATCTTGATTATGATCTGAACAATGATTCAAAGGGAATGCAAGCAAGCAAGGAAGGATGA 1218 0.4204 MGAAYDQGSNKSLVSMDSSRKRKSRSRGDGTRSVAETLAKWKEYNEHLYSSGSGKSDGKPTRKAPAKGSKKGCMKGKGGPQNSQCNYRGVRQRTWGKWVGEIREPNRGSRLWLGTFSTAQEAALAYDEAARAMYGPCARLNFPHISDYTSIREQLKESSSAGGTCSCSSVATPATSDTTTISNQSEVCAAEDVKEKPRPVNTNNTVNVNVCHQVYESGSPTSKMKQVPKDEPVDLTDDPASWEIQDIFKPERTHDEGKVGEDVCIDQMDFSWIDNIDFNGDYLKSFSTDELFQVDELLGHIDNNPIDNSGLMQGLDFGLMSFPEESNPQAETPSSFMYQLQNPDAKLLGSLPHMEQTPSGVDYGLDFLKTEEAGDYNGGGEESRFLNLDYDLNNDSKGMQASKEG 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi308g00040 405 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 19 364 - -
Sebi308g00040 405 MobiDBLite consensus disorder prediction 48 86 - -
Sebi308g00040 405 SMART rav1_2 86 149 IPR001471 GO:0003700|GO:0006355
Sebi308g00040 405 CDD AP2 85 144 IPR001471 GO:0003700|GO:0006355
Sebi308g00040 405 MobiDBLite consensus disorder prediction 1 34 - -
Sebi308g00040 405 Gene3D AP2/ERF domain 86 145 IPR036955 GO:0003700|GO:0006355
Sebi308g00040 405 MobiDBLite consensus disorder prediction 16 30 - -
Sebi308g00040 405 PRINTS Ethylene responsive element binding protein signature 109 125 IPR001471 GO:0003700|GO:0006355
Sebi308g00040 405 PRINTS Ethylene responsive element binding protein signature 87 98 IPR001471 GO:0003700|GO:0006355
Sebi308g00040 405 Pfam AP2 domain 85 135 IPR001471 GO:0003700|GO:0006355
Sebi308g00040 405 FunFam Ethylene-responsive transcription factor 2 85 144 - -
Sebi308g00040 405 SUPERFAMILY DNA-binding domain 86 144 IPR016177 GO:0003677
Sebi308g00040 405 ProSiteProfiles AP2/ERF domain profile. 86 143 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi308g00040 Sebi-Chr308 632352 633569 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi308g00040 9 389 AP2-EREBP Transcription Factor Family AT2G40340 38.974 6.81e-67 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Sebi308g00040 AP2 1.3e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi308g00040 - K09286 gmx:100800134 545.043