Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi307g00056 ATGAATCTCAATCTCCCTTCTCTGTCTCTCACGCGCTTCCCTGAGCGTCTTGTTGCTCCTCTTTGTTCTTCAGTTCCTACAACCGCTACCAGGGGCAATAGCGTGGAGAGTATTGCAATTGAAGGCCGTAATCTGAATTTCTCATTCAAGGCGAGGCAAACAAAGGACGTGCAAGTTCTTAAGGATTGTTCACTTCGCATTCCTTCTGGGCAGTTTTGGATGCTTCTTGGACCTAATGGGTGTGGAAAATCAACCCTCTTGAAGATTTTGGCTGGTCTCTTGACTCCAACTTCTGGAACAGTGTACGTGAATGAGCCTAAAAGTTTTGTTTTCCAAAATCCAGATCATCAGGTGGTGATGCCTACAGTAGATGCTGATGTTGCATTTGGTCTTGGTAAAATCAATTTAACCCAGGATGAAGTCAGATCTAGGGTGTCTCAAGCTCTGCATGCTGTTGGCCTGTCTGACTACATGAAGAGATCTGTCCAAACTCTGAGTGGTGGACAGAAGCAGAGGGTTGCCATTGCTGGTGCTCTAGCAGAAGCTTGTAAAGTTCTGTTGTTGGATGAGCTGACCACATTCTTAGATGAAACTGACCAGATTGGGGTTATCAAAGCTGTTAGGAACTCTCTGGATACCTCAGCAGAAGTTACAGCATTGTGGGTCACCCATCGTTTGGAAGAACTAGAGTATGCAGATGGTGCCATCTACATGGAGGATGGGAAAATGATCATGCATGGAGATGCAGCAAGCATAAGAAGGTTTATTGAAGCCAGGCAATCCGCCTATATTGACCAGATTAATTCTTAA 810 0.4506 MNLNLPSLSLTRFPERLVAPLCSSVPTTATRGNSVESIAIEGRNLNFSFKARQTKDVQVLKDCSLRIPSGQFWMLLGPNGCGKSTLLKILAGLLTPTSGTVYVNEPKSFVFQNPDHQVVMPTVDADVAFGLGKINLTQDEVRSRVSQALHAVGLSDYMKRSVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDETDQIGVIKAVRNSLDTSAEVTALWVTHRLEELEYADGAIYMEDGKMIMHGDAASIRRFIEARQSAYIDQINS 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi307g00056 269 CDD ABC_cobalt_CbiO_domain1 41 242 IPR015856 GO:0005524|GO:0016020|GO:0055085
Sebi307g00056 269 Pfam ABC transporter 60 192 IPR003439 GO:0005524
Sebi307g00056 269 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 40 265 IPR003439 GO:0005524
Sebi307g00056 269 ProSitePatterns ABC transporters family signature. 165 179 IPR017871 GO:0005524|GO:0016887
Sebi307g00056 269 Gene3D - 35 268 IPR027417 -
Sebi307g00056 269 PANTHER ABC TRANSPORTER I FAMILY MEMBER 10 40 253 - -
Sebi307g00056 269 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 36 257 IPR027417 -
Sebi307g00056 269 FunFam ABC transporter I family member 10 36 266 - -
Sebi307g00056 269 SMART AAA_5 69 242 IPR003593 GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi307g00056 Sebi-Chr307 847145 849794 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi307g00056 40 247 Calmodulin-binding Proteins AT2G36910 30.088 1.81e-22 95.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi307g00056 - - gmx:100813654 450.284