Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi307g00052 ATGGGAAGATCAAGCAGCAGCAGTAACAGTGAGAGTAAAAAAAGTTGCAATAGAGGCCATTGGAGACCCTGTGAAGATGAGAGACTAAGACAACTTGTGAAGCAATATGGTCCTCAGAATTGGAATTTCATTTCTGAACACCTTGAAGGAAGATCAGGGAAAAGTTGCAGGTTGAGGTGGTACAATCAACTAGACCCAAATATAATTAGAAATCCATTCACTGATGAAGAGGAAGAAATGCTCCTAGCACTTCACAAAGTCAAGGGAAACAAATGGGCTGCAATAGCTAGATTTTTCCCTGGAAGAACAGACAATGCTGTGAAGAATCACTTCCATGTGTTAATGGCCAGAAGGAAGAGAGAGTGCTTGGCATTGTTTGGTAATAACACAATTGGCCATAATTCAAGGATTAATTTTAACTTACAAAACTATAAAAACACAGGAATATTTGGTATGCAGTCTACCTCACAGACATCAACTCCTTATTGGACTCTCACAAGTGGTTCTTCAACAATCACATCAAGTTTTGATGCTTCTGGTGTAGGTAGTAGCATTAGCAAGGCTCACAAAGACTCAATGTTTTCTTCAAGTGCTGGAGAGAAACCACATGATTTGAACCATTTTCCTTCAGGTGTAGGTTCTTCTTTTCTTGGCAGTTACAACAGTTTCACTGCCCCTGGACTTCCAAGTATTGGCAAGGTTGTTCCCCTTTCACATAAGTTCTTAAACTCTAATTATGGCCACAGAACTGAGGACTCCAACAAAGGAAGTTCTCATGCCAGTGATGACAGTATTGGTGGACCATGA 807 0.404 MGRSSSSSNSESKKSCNRGHWRPCEDERLRQLVKQYGPQNWNFISEHLEGRSGKSCRLRWYNQLDPNIIRNPFTDEEEEMLLALHKVKGNKWAAIARFFPGRTDNAVKNHFHVLMARRKRECLALFGNNTIGHNSRINFNLQNYKNTGIFGMQSTSQTSTPYWTLTSGSSTITSSFDASGVGSSISKAHKDSMFSSSAGEKPHDLNHFPSGVGSSFLGSYNSFTAPGLPSIGKVVPLSHKFLNSNYGHRTEDSNKGSSHASDDSIGGP 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi307g00052 268 ProSiteProfiles Myb-like domain profile. 13 64 IPR001005 -
Sebi307g00052 268 MobiDBLite consensus disorder prediction 1 20 - -
Sebi307g00052 268 Gene3D - 18 69 - -
Sebi307g00052 268 FunFam MYB transcription factor 18 69 - -
Sebi307g00052 268 CDD SANT 72 115 IPR001005 -
Sebi307g00052 268 CDD SANT 21 62 IPR001005 -
Sebi307g00052 268 MobiDBLite consensus disorder prediction 246 268 - -
Sebi307g00052 268 PANTHER MYB PROTEIN-RELATED 18 185 - -
Sebi307g00052 268 Gene3D - 71 145 - -
Sebi307g00052 268 SUPERFAMILY Homeodomain-like 17 111 IPR009057 -
Sebi307g00052 268 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 70 119 IPR017930 -
Sebi307g00052 268 ProSiteProfiles Myb-like domain profile. 65 115 IPR001005 -
Sebi307g00052 268 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 13 68 IPR017930 -
Sebi307g00052 268 SMART sant 69 117 IPR001005 -
Sebi307g00052 268 SMART sant 17 66 IPR001005 -
Sebi307g00052 268 Pfam Myb-like DNA-binding domain 21 81 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi307g00052 Sebi-Chr307 785244 786292 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi307g00052 1 161 MYB Transcription Factor Family AT4G33450 56.571 6.57e-65 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Sebi307g00052 Myb_DNA-bind_6 9.7e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi307g00052 K09422 - qsa:O6P43_023373 226.098