Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi307g00029 ATGAACAACAAAGCCAACCGTAAGCGGCAGGCGCCGCCGCCGCCGCAACCCTCACCGGCGAGGCAAGCCCTCTCCCAGGATGAAGAGTTCGTCGACGAAGACGTGTTCCTGGACGAAACCCTTGTTTCTGAAGACGAAGAGTCCCTCATCCTCCGTGATATCGAGCAGCGGCAGGCCCTCGCCTCTCGTCTCTCCAAGTGGACTCGTCCTCCTCTTTCCTCTGAGTACCTCTCGCAATCTCGTAGTGTCCTTTTTCAGCAGCTGGAGATTGATTATGTAATTGGAGAGAGTCATAAAGAATTGCTGCCGAACTCGTCTGGACCTGCTGCCATTATTAGAATATTTGGAGTTACGAAGGAAGGACATAGCGTTTGCTGTAAAGTTCATGGGTTTGAACCATATTTCTACATCAGCTGTCCTCCTGGAATGGGTCCAGATGATATCTCTCATTTTCATCAAATTCTTGAGGGAAGGATGAGAGAAGCCAATAGAAACAATAACGTGGGAAAATTTGTTCGCCGTATTGAAATGGTGCAGAGAAGGAGTATTATGTACTATCAGCAGTCAAATTCCCATCCTTTTCTCAAAATTGTAGTTGCACTCCCAACAATGGTTGCCAGCTGCCGTGGTATTCTTGATAGAGGTATTCAGCTTGATGGTCTGGGCATGAAAAGCTTCATGACTTATGAGAGCAATGTACTTTATGCCCTTCGTTTCATGATTGATTGCAACATAGTTGGTGGAAATTGGATTGAAATTCCTGCTGAAAAATATAAAAAGACAGTAAAGAGCTTGTCTTACTGCCAATTAGAGTTCGATTGCCTCCATGCTCCAGAAGGGGAATATTCAAAGATGGCTCCGTTTCGCATTTTAAGTTTTGACATTGAGTGTGCTGGTCGTAAAGGTCATTTTCCTGAGCCTACCCATGATCCTGTTATCCAGATTGCTAATCTGGTTACTTTACAAGGAGAAGACCAACCATTTATTCGTAATGTGATGACCCTTAAATCATGTTCTCCTATTGTTGGTGTTGATGTGATGTCATTTGATACAGAAAGAGAAGATTTTATCCGTGAAGTGGACCCTGATATTATTATTGGATATAACATCTGCAAATTTGACTTGCCATATCTTATTGAGAGAGCCACAGCCCTAAAAATAGCAGAATTTCCAATTCTGGGCCGTATCAGGAACAGTAGAGTTCGAGTAAAGGATACAACTTTCTCATCAAGGCAGTTAGGGACCAGGGAAAGCAAAGAAGTTACAGTCGAAGGGAGAGTTCAGTTTGATTTGCTCCAGGCTATGCAAAGAGACTACAAATTAAGTTCTTATTCATTGAATTCTGTGTCAGCACACTTCCTTTCTGAGCAGGTAAACTTGATGGAGATAAAAATAGAAGTTAACAATAATCAGCCCAAGGATGCATATCTCCCTCAACGGCTTTTGGATAAATTGATGTTCATTTACAATTATGTGGAGATGGCTCGAGTAACAGGTGTCCCAATTTCTTTTCTTCTTTCCAGGGGCCAAAGCATTAAGGTACTCTCTCAACTTCTTAGGAAAGCAAAACAGAAGAACCTGGTCATTCCTAATGCCAAACAGGCAGGGTCAGAACAAGGAACGTTTGAAGGTGCCACTGTATTGGAGGCAAGGGCTGGATTTTATGAAAAGCCAATTGCTACTTTAGATTTTGCATCCTTGTACCCGTCTATTATGATGGCCTATAATTTATGTTATTGTACTCTGGGCATACTTCCTGAAATACTTGAAGAGCTATTAACAGCCCGTAAAAGGGCGAAAGCAGACTTAAAGGAGGCAAAGGATCCCCTTGAGAAGGCTGTGCTAGATGGTAGACAGCTGGCCCTCAAGATTAGTGCAAATTCTGTATATGGGTTTACAGGGGCTACTATTGGTCAATTACCATGCTTAGAGATATCATCCAGTGTAACAAGCTATGGTCGACAGATGATCGAGCACACTAAAAAACTTGTGGAAGATAAATTTACAACACCTAATGGCTATGAGCACAATGCTGAGGTAATATATGGAGACACAGATTCAGTCATGGTACAGTTTGGTGTTTCTTCTGTAGAAGAGGCTATGAACTTGGGGAGAGAAGCTGCCGAATATATTAGTGGAACTTTCATAAAGCCCATCAAGCTAGAATTTGAGAAGGTTTACTTTCCATATCTCCTGATTAGCAAGAAGAGATATGCTGGTTTGTTTTGGACAAAACCTGACAAATTTGACAAAATGGACACTAAAGGTATTGAAACAGTTCGAAGAGACAATTGCTTATTGGTAAAAAACCTGGTGAACGATTGCCTTCACAAAATACTGATTGACAGGGACATTCCTGGGGCAGTCCAGTATGTCAAGAATGCGATTTCAGATCTTCTCATGAACCGTATGGATTTATCACTTCTGGTCATTACAAAGGGTTTGACGAAGACAGGAGATGATTATGAAGTAAAGGCAGCTCATGTTGAACTTGCTGAAAGGATGCGCAAGCGAGATGCTGCTACTGCTCCAAATGTTGGAGATAGAGTACCTTATGTTATTGTTAAAGCTGCAAAAGGTGCCAAGGCTTATGAGAGATCAGAGGATCCTATCTATGTGCTGGAGAACAACATACCAATAGATCCTCAGTACTATCTTGAGAATCAAATTAGCAAGCCAATTCTGAGAATATTTGAACCAATTCTGAAAAATGCTAGCAAGGAACTTCTCCATGGAAGCCACACAAGATCTATTTCTATTTCTACTCCATCAAACAGTGGCATAATGAAATTTGCTAAGAAACAACTTACTTGCATTGGTTGCAAAGCTTTACTTAGCAATGGAGATCGTACTCTCTGCTCACATTGCAAAGGAAGGGAAGCTGAACTGTACTGTAAAACAGTGGCTCAAGTGTCTGATCTGGAGATGCTTTTTGGGAGGTTGTGGACACAGTGTCAGGAGTGCCAAGGCTCACTTCATCAGGATGTTCTCTGCACAAGTCGGGATTGTCCAATTTTTTATCGACGTAAAAAGGCACAGAAAGATATGGCTGAAGCAAGGTTGCAATTGGACCGATGGAACTTCTAA 3087 0.4198 MNNKANRKRQAPPPPQPSPARQALSQDEEFVDEDVFLDETLVSEDEESLILRDIEQRQALASRLSKWTRPPLSSEYLSQSRSVLFQQLEIDYVIGESHKELLPNSSGPAAIIRIFGVTKEGHSVCCKVHGFEPYFYISCPPGMGPDDISHFHQILEGRMREANRNNNVGKFVRRIEMVQRRSIMYYQQSNSHPFLKIVVALPTMVASCRGILDRGIQLDGLGMKSFMTYESNVLYALRFMIDCNIVGGNWIEIPAEKYKKTVKSLSYCQLEFDCLHAPEGEYSKMAPFRILSFDIECAGRKGHFPEPTHDPVIQIANLVTLQGEDQPFIRNVMTLKSCSPIVGVDVMSFDTEREDFIREVDPDIIIGYNICKFDLPYLIERATALKIAEFPILGRIRNSRVRVKDTTFSSRQLGTRESKEVTVEGRVQFDLLQAMQRDYKLSSYSLNSVSAHFLSEQVNLMEIKIEVNNNQPKDAYLPQRLLDKLMFIYNYVEMARVTGVPISFLLSRGQSIKVLSQLLRKAKQKNLVIPNAKQAGSEQGTFEGATVLEARAGFYEKPIATLDFASLYPSIMMAYNLCYCTLGILPEILEELLTARKRAKADLKEAKDPLEKAVLDGRQLALKISANSVYGFTGATIGQLPCLEISSSVTSYGRQMIEHTKKLVEDKFTTPNGYEHNAEVIYGDTDSVMVQFGVSSVEEAMNLGREAAEYISGTFIKPIKLEFEKVYFPYLLISKKRYAGLFWTKPDKFDKMDTKGIETVRRDNCLLVKNLVNDCLHKILIDRDIPGAVQYVKNAISDLLMNRMDLSLLVITKGLTKTGDDYEVKAAHVELAERMRKRDAATAPNVGDRVPYVIVKAAKGAKAYERSEDPIYVLENNIPIDPQYYLENQISKPILRIFEPILKNASKELLHGSHTRSISISTPSNSGIMKFAKKQLTCIGCKALLSNGDRTLCSHCKGREAELYCKTVAQVSDLEMLFGRLWTQCQECQGSLHQDVLCTSRDCPIFYRRKKAQKDMAEARLQLDRWNF 1028
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi307g00029 1028 FunFam DNA polymerase 756 912 - -
Sebi307g00029 1028 Pfam DNA polymerase family B, exonuclease domain 118 449 IPR006133 -
Sebi307g00029 1028 Pfam C4-type zinc-finger of DNA polymerase delta 938 1009 IPR025687 -
Sebi307g00029 1028 PANTHER DNA POLYMERASE CATALYTIC SUBUNIT 68 994 - -
Sebi307g00029 1028 Coils Coil 1009 1028 - -
Sebi307g00029 1028 SUPERFAMILY DNA/RNA polymerases 525 903 IPR043502 -
Sebi307g00029 1028 FunFam DNA polymerase 287 486 - -
Sebi307g00029 1028 Gene3D - 287 486 IPR036397 GO:0003676
Sebi307g00029 1028 FunFam DNA polymerase 583 635 - -
Sebi307g00029 1028 SUPERFAMILY Ribonuclease H-like 109 506 IPR012337 -
Sebi307g00029 1028 Gene3D - 757 911 IPR042087 -
Sebi307g00029 1028 MobiDBLite consensus disorder prediction 1 26 - -
Sebi307g00029 1028 CDD DNA_polB_delta_exo 282 492 - -
Sebi307g00029 1028 FunFam DNA polymerase 89 264 - -
Sebi307g00029 1028 Gene3D Palm domain of DNA polymerase 646 756 IPR023211 -
Sebi307g00029 1028 CDD POLBc_delta 541 902 - -
Sebi307g00029 1028 PRINTS DNA-directed DNA-polymerase family B signature 680 688 IPR006172 GO:0000166|GO:0003676|GO:0003887
Sebi307g00029 1028 PRINTS DNA-directed DNA-polymerase family B signature 559 572 IPR006172 GO:0000166|GO:0003676|GO:0003887
Sebi307g00029 1028 ProSitePatterns DNA polymerase family B signature. 682 690 IPR017964 GO:0000166|GO:0003676
Sebi307g00029 1028 SMART polmehr3 286 694 IPR006172 GO:0000166|GO:0003676|GO:0003887
Sebi307g00029 1028 Gene3D Palm domain of DNA polymerase 488 583 IPR023211 -
Sebi307g00029 1028 Gene3D Helix hairpin bin 584 636 - -
Sebi307g00029 1028 Pfam DNA polymerase family B 500 582 IPR006134 GO:0000166|GO:0003677
Sebi307g00029 1028 Pfam DNA polymerase family B 583 901 IPR006134 GO:0000166|GO:0003677
Sebi307g00029 1028 Gene3D DNA Polymerase, chain B, domain 1 88 264 - -
Sebi307g00029 1028 NCBIfam DNA polymerase (pol2) 521 899 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi307g00029 Sebi-Chr307 376546 392017 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi307g00029 8 1028 Core DNA Replication Machinery Family AT5G63960 77.302 0.0 1724
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi307g00029 K02327 - gmx:100817379 1850.87