Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi307g00028 ATGGCTATGGATGATGGCAACTTGGATATAGGAGACCCCCTTCAAGACCTTACTCCAAATAACATAGAGAAAGAGTATTGTGGCTGGCTAAGGCTAAGCAGCTTCAGGGAACTGCCAAAGAGTTATGTCCCACCTTACTCAATACATGACATGGAATGGTATCTAAGTTCCCCTGATGATTTTATATCTTTGAACGACCTGGAGCTGACGCCAGAGCACCAAAGCTATTATTATTTTGACAATGCCATTGCCAGGGCCAGCCAATCTCCTAAGGAGCTGGATTTGAAGCACCAAAGCCGTGACGAAGAAATGAGAAAAAATGGGATTGGGATTGAGTCTTTGCTGCAGGGATTGATTGGGTTTACAAGGAAGAAAAGGAGGACGAAAAATTATCAGAAGCGAAAATGGAGAGTGAGATGGGTAAAAAAGAGGTGCAGCCATTGCAAGACCGAAGAGACACCGCAATGGAGGGTAGGGCCTTTGGGACCTAAGACACTATGCAATGCTTGCGGAGTGCGATTCAAGTCTGGACGGTTAATTCCTGAATATCGTCCAGCCACTAGTCCCACCTTTGATAGTAGGAGGCATTCTAACTACCATAAAAACATACTCAGGAGACGATCTTCCATTTAG 633 0.4487 MAMDDGNLDIGDPLQDLTPNNIEKEYCGWLRLSSFRELPKSYVPPYSIHDMEWYLSSPDDFISLNDLELTPEHQSYYYFDNAIARASQSPKELDLKHQSRDEEMRKNGIGIESLLQGLIGFTRKKRRTKNYQKRKWRVRWVKKRCSHCKTEETPQWRVGPLGPKTLCNACGVRFKSGRLIPEYRPATSPTFDSRRHSNYHKNILRRRSSI 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi307g00028 210 CDD ZnF_GATA 144 192 IPR000679 GO:0006355|GO:0043565
Sebi307g00028 210 ProSiteProfiles GATA-type zinc finger domain profile. 143 175 IPR000679 GO:0006355|GO:0043565
Sebi307g00028 210 MobiDBLite consensus disorder prediction 187 210 - -
Sebi307g00028 210 Gene3D - 139 206 IPR013088 GO:0006355|GO:0008270
Sebi307g00028 210 SMART GATA_3 139 189 IPR000679 GO:0006355|GO:0043565
Sebi307g00028 210 Pfam GATA zinc finger 145 178 IPR000679 GO:0006355|GO:0043565
Sebi307g00028 210 FunFam GATA transcription factor 140 189 - -
Sebi307g00028 210 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 142 201 - -
Sebi307g00028 210 PANTHER GATA TRANSCRIPTION FACTOR 128 207 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi307g00028 Sebi-Chr307 367636 368268 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi307g00028 35 209 C2C2-Gata Transcription Factor Family AT4G34680 40.113 4.07e-32 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Sebi307g00028 GATA 3.6e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi307g00028 - - aprc:113869248 281.952