Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi307g00024 ATGAAGTTAATCGGCGACAGCGGCGGTGGCCGGAAGGTGTTAGTCGGAGTAAAGTTAGATCCTCGGAGCCGGGAATTGCTGACGTGGGCTCTCGTCAAGGTAGCGGAGCCCGGCGACCTCGTCATTGCGCTTCACAGTGTGGATTTTGGTGCAGAGGGCACAGCATCGCTGCTATCTCTGGTGAAGACCTTCGATTCTGTTCTCGCCGTATACGAAGGCTTCTGCCATTTAAAGCAGGCTAAAGTGTGTCGAGGTGGTTCGCCTCGGAAGCTTCTGGTACAAGAGGCGAAATCGTTTGGTGTTGCGACGGTGATTCTGGGAACTTCTAAGTCCCATCATCCAATTCGTTCGTCGGTATCAGTTGCTAAATATTGCGCGAAGAAATTGCCAAAGTGTGTCTCTGTCTTCGCTGTTGATAATGGCAAAATTGCATTCCACAGAGAAGCTGCCACAATTTGCAGTGATCAAGAAAAATTACATGAAGGCCCAAATTTATCATCGAAATCATTGGTGGCTTTTGCAACAAATAAAAGGATGAAGAATTGTGAAAGTTGTGCATGGCAAGAGACTTGTGAAACTGAATCTAAGGAAGGGTTTCCTGATGATCTTGAAAAGGAAAATCCACTTGCTTTGGTACCATTTCAGAAACTTGATGATGCTCCTTGTTATTCAATTGTGGTGGGTAATTCGAAACAGTCAAAACCTGGTTGGTCACTCCTTCGCCAGCCCAACTGCCATTCTTCAGCTGTAGTCCATCCAGATCAGAAACAAATTAATATTGACCAAAATGATGATTCCACCCTAGATGGGGTGAGTGGTGCCATTGTGCCATTTGGATCTACTACTGTCTTTCCTCCTCCCTCTTTTTGCAGTGACTCAAATAGTCTTCCGGAAGAATTGATGGTCTTACAAGAGAAGTACTCATCTTCATGCCGGATATATGGTTTGCAGGAACTTGTATCTGCAACTGCCAACTTCTCCCCCGAAAATTTGGTTGGAAAAGGTGGTAGCAGTGATGTTTACAGAGGATGTCTTCCAGATGGCAAGGAATTGGCTGTGAAAATTTTGAAGCCATCAGAAAATGTGCTAAAGAGTTTGTTCAGGAAATTGAGGGGAAGCCTAGAAGAAAACCTTCATGGTAATAAAAAGGACTGTAATGCATTTGGTTGGCGAGAAAGATACCAGGTGGCTGTGGCTGTGGCTGAGGCATTGGACCATCTGCACAATGGCTGTGCACAGGCTGTGATCCATAAGGATGTGAAATCTTCGAATATCCTTCTTTCTGATGAATTTGAGGCTCAGCTCTCCGATTTCGGACTGGCTAGTTGGGGTTCTTCTTCTTCCCATATTACTTGCACTGATGTGGCCGGAACTTTTGGATACCTAGCTCCTGAATACTTTATGCATGGTAGAGTGACTGACAAAATTGATGTATATGCTTTTGGGGTTGTACTCCTTGAGCTTCTATCAAATAGGAAGCCCATTAACAATGAATGTCCAAAGGGCGCAGAGAGCCTTGTTATGTGGGCAACACCTATTTTGAAAGATGGGAAGCTCTCCCAGTTGCTTGATCCAAGCCTAGGCAGTGAATATGACCATTCGCAGATCAAGAGAATGGTGTTGGCTGCTACTCTCTGCATAAGACGAGCTCCTAGATTACGACCTCAAATCAGCCTTATATTGAAACTTCTGCGTGGTGTCGAAGAAGTGACAAGATGGGCAGAACTAGAGGCTAGTGCACCAGAGGAACTTGATGGATTTGATGAGGAACCAGTTCCAACCAATATTCAGTCCCACCTTAACCTTGCATTGCTGGACTTGGAAGATGATGCAGTTTCTATCAGTAGTACTGAGCAGAGTGTTTCATTGGAGGACTATTTACAGGGAAGATGGAGTCGCTCTTCTAGTTTTGACTAA 1917 0.4502 MKLIGDSGGGRKVLVGVKLDPRSRELLTWALVKVAEPGDLVIALHSVDFGAEGTASLLSLVKTFDSVLAVYEGFCHLKQAKVCRGGSPRKLLVQEAKSFGVATVILGTSKSHHPIRSSVSVAKYCAKKLPKCVSVFAVDNGKIAFHREAATICSDQEKLHEGPNLSSKSLVAFATNKRMKNCESCAWQETCETESKEGFPDDLEKENPLALVPFQKLDDAPCYSIVVGNSKQSKPGWSLLRQPNCHSSAVVHPDQKQINIDQNDDSTLDGVSGAIVPFGSTTVFPPPSFCSDSNSLPEELMVLQEKYSSSCRIYGLQELVSATANFSPENLVGKGGSSDVYRGCLPDGKELAVKILKPSENVLKSLFRKLRGSLEENLHGNKKDCNAFGWRERYQVAVAVAEALDHLHNGCAQAVIHKDVKSSNILLSDEFEAQLSDFGLASWGSSSSHITCTDVAGTFGYLAPEYFMHGRVTDKIDVYAFGVVLLELLSNRKPINNECPKGAESLVMWATPILKDGKLSQLLDPSLGSEYDHSQIKRMVLAATLCIRRAPRLRPQISLILKLLRGVEEVTRWAELEASAPEELDGFDEEPVPTNIQSHLNLALLDLEDDAVSISSTEQSVSLEDYLQGRWSRSSSFD 638
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi307g00024 638 PANTHER OS08G0249100 PROTEIN 148 360 IPR046958 -
Sebi307g00024 638 FunFam probable receptor-like serine/threonine-protein kinase At5g57670 10 139 - -
Sebi307g00024 638 SUPERFAMILY Protein kinase-like (PK-like) 307 564 IPR011009 -
Sebi307g00024 638 ProSitePatterns Serine/Threonine protein kinases active-site signature. 415 427 IPR008271 GO:0004672|GO:0006468
Sebi307g00024 638 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 11 135 - -
Sebi307g00024 638 Gene3D HUPs 5 138 IPR014729 -
Sebi307g00024 638 ProSiteProfiles Protein kinase domain profile. 237 571 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi307g00024 638 Gene3D Phosphorylase Kinase; domain 1 301 374 - -
Sebi307g00024 638 Gene3D Transferase(Phosphotransferase) domain 1 375 580 - -
Sebi307g00024 638 SMART serkin_6 326 536 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi307g00024 638 Pfam Universal stress protein family 11 133 IPR006016 -
Sebi307g00024 638 FunFam Putative receptor-like serine/threonine-protein kinase 369 580 - -
Sebi307g00024 638 ProSitePatterns Protein kinases ATP-binding region signature. 332 354 IPR017441 GO:0005524
Sebi307g00024 638 Pfam Protein kinase domain 388 500 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi307g00024 638 CDD USP_Like 12 133 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi307g00024 Sebi-Chr307 333457 336551 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi307g00024 313 565 Trihelix Transcription Factor Family AT1G68690 39.731 8.27e-55 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Sebi307g00024 Pkinase 4.1e-23 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi307g00024 - - gmx:100815722 981.089