Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi307g00018 ATGTCTGGAAAGGGGAAGAAGAGGGAGGAGCACGACTGCGCTTCCGATGGCGACTCCGAAGGCCACGCGCCTCCCAAAAAGTCTCTCAAAAGAGATTCCGATGACGACCCCGACTCCATCGTTGTCTGTGAGATTTCAAAGAACAGGAGGGTTTCCGTGAGGAATTGGCAGGGCAGGATTGTGGTTGACATTCGCGAGTTTTACGTCAAAGATGGCAAGCAAATGCCCGGCAAAAAAGGTATCTCATTGACCATGGATCAGTGGAATGTGCTTCGTAATCACATTGAAGAAATTGACCAGGCAGTTAATGAGAATTCTTAG 321 0.4891 MSGKGKKREEHDCASDGDSEGHAPPKKSLKRDSDDDPDSIVVCEISKNRRVSVRNWQGRIVVDIREFYVKDGKQMPGKKGISLTMDQWNVLRNHIEEIDQAVNENS 106
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi307g00018 106 SUPERFAMILY ssDNA-binding transcriptional regulator domain 42 103 IPR009044 GO:0003677|GO:0006355
Sebi307g00018 106 Pfam Transcriptional Coactivator p15 (PC4) 43 94 IPR003173 GO:0003677|GO:0006355
Sebi307g00018 106 Gene3D Transcriptional Coactivator Pc4; Chain A 30 106 IPR009044 GO:0003677|GO:0006355
Sebi307g00018 106 MobiDBLite consensus disorder prediction 1 39 - -
Sebi307g00018 106 PANTHER RNA POLYMERASE II TRANSCRIPTIONAL COACTIVATOR 20 105 IPR045125 GO:0003713|GO:0060261
Sebi307g00018 106 FunFam Putative transcriptional co-activator 33 106 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi307g00018 Sebi-Chr307 219523 221412 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Coactivator p15 Sebi307g00018 PC4 3.3e-25 CL0609
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi307g00018 K25815 - gmx:100820368 186.037