Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi306g00029 ATGGCAACAACGGCTATATTTCTCATCTCCATTGCAGTGGTTGCAAACTTCACCTTAACCTCAACCTTTGCACAGAGCAACAACAATGTGAGTCACTCAGAGATCCAAGCCTTAACAGCCTTCAAGCTCAACCTTCACGACCCTCTTGGTTCCTTAGATGGATGGGACCCTTCAACCCCTTCAGCACCCTGTGATTGGCGTGGCATTCTCTGTTTCAAAAACAGAGTTCATGAACTTCGCTTACCTCGTCTTCAACTCACTGGTCCACTCTCTCCTTCTCTCTCTAACCTCTCACAACTTCGCAAACTCAGTCTCCACTCTAACAACTTCAACTCCTCCATCCCTTCCTCTCTTTCCCATTGCTTGTTCCTCCGTGCCGTTTACCTTCACAACAACAAACTCTCCGGCAACCTTCCTCCGCCGCTTCTCAATCTCACCAACCTTCAGATTCTCAACCTCGCTCACAACCTTCTCTCCGGTACAATCCCTGGAAACCTCTCAACCTCCCTCCGGTTCCTTGACTTGTCCTCAAACGCATTCTCCGGCGACATTCCGGCGAACTTCACCTCAAAATCTCAGCTTCAGCTTATCAACTTGTCCTACAATGGCTTCACCGGCGGAATACCTGTCACCATTGGAGCATTGCAACGTTTGGAGTATCTGTGGTTAGATTCCAACAATCTTCATGGAACGTTACCTTCAGCTCTTGCCAACTGTTCCTCACTGGTGCACCTGAGCGCAGAGGATAATGCCATCGGAGGTTTGATTCCGGCCACCATGGGGACCATGCCGAAGCTTCAAGTGCTGTCACTTTCGCTGAATCAACTTTCGGGTTCGGTCCCCACGTCTCTGTTTTGCAATGAACACACGGATTGGTCTCTGCGAATTGTTCAGCTTGGCTTTAATAACCTCACGGGTATTACCAAGCCGCAAAGTGGGGGCAAAAAATGTGTTAGCTTTTTGCAGATTTTGGACCTTAAGGAGAATCACATTATTCGTGCTTCGTTTCCCTTTTGGTTGACCAATGCGACGTCGTTGAGGGTTCTTGATCTTTCTGGAAACTCATTTTCAGGTGTTCTGCCTCCAGATATTGGGAATCTTTTCAGGTTAGAAGAATTGAGATTGTCGAATAATTCATTATCTGGTGGAGTCCCTATTAGTATTGTGAATTGTAGAGTGTTGCGGGTTCTTGATCTTCAGGGGAACAAGTTCTCTGGTCCTGTTCCTTCTTTTCTTGGTCAACTGAGAAGCCTCAAGGTGTTATCTCTTGGTGGTAACCTTTTTACTGGGTCAATACCCACCAGTTATGGGTCACTTTATGAGCTAGAGTCACTGAATTTGAGTAACAATAATCTAACAGGGATTTTGCCTGAGGAGATCATGCAATTAGGGAACATGAGTGCTTTGAATCTCAGCAATAATAGATTTTCTGGCCAAGTTTCTTCTCATATTGGGGACTTGATGGCTTTGCAAGTTCTTAATTTGAGTCACTGTGGGTTTTCAGGAAGGGTTCCCTCTACACTGGGTAATTTGATGAAACTTACAGTGTTGGATTTGAGCAAGCAAGCCTTTCTGGTGAATTGCCTGTTGAGCTTTTTTGGATTACCAAGCTTGCAAGTTGTGGCACTTGAGGAAAACCATTTAAGTGGTGCTGTTCCTGAGGGTTTCAGCAGCATAGTTAGTCTAAGTATTTCTGGTGCAATACCTCCTGAGATTGGTGGTTGTTCTCAACTTGAAATTCTCCAGCTGCAGTCAAATCATTTGCAAGCTAACATTCCTAGTCAAATACCAGAATCCTTGTCAAAATTATCAAACTTGACTGAGTTGAGTCTTTCTTCAAATCAATTAACCGGTGAAATTCCGGTTGATCTTTCACAAATTGCTGGTTTGAAGTATCTAAACCTATCCAATAACAATCTTGAGGGTGAGATTCCTGAGATGCTTGGTTCAAGATTCAATGACCCTTCTGTGTTTGCAATGAACCAGAGGCTATGTGGGAAACCTTTACATAAAGAATGTGCAAATGTGAGAAGGAGAAAGAGGAGAAGGCTAATAATCTTTATTGGCGTGGCTGTGGCTGGACTTTGTCTTTTGGCATTGTGTTGCTGTGGCTATGTTTACAGTCTCTTAAGATGGCGCAACAAGCTCAGAGAAGGGGTGACTGGTGAGAAGAAACGTAGCCCTGCTAGTGCAGGCTCAGGAACAGACAGAAGTAGAGGGAGTGGTGAAAATGGAGGGCCAAAACTAGTAATGTTCAACAACAAGATCACTTATGCAGAGACATTAGAAGCAACAAGAAACTTTGATGAGGAAAATGTGTTGAGTAGGGGAAGGTATGGACTTGTGTTCAAAGCCTCCTACAATGATGGCATGGTTCTATCCATTCGTCGCCTCCCTGATGCATTCATGGATGAGGGTACTTTCCGCAAAGAAGCAGAATCACTAGGAAAAGTGAAGCATCGCAATTTAACAGTTCTGCGTGGCTATTATGCAGGACCACCACCTGATGTAAGGCTTCTTGTTTATGACTACATGCCAAATGGGAACCTAGGGACATTGCTTCAAGAAGCATCTCAACAAGATGGCCATGTTCTGAATTGGCCAATGCGTCATCTCATAGCACTAGGCATTGCTCGTGGGTTGGCTTTCTTACACTCAGTGCCAATAGTTCATGGTGATGTGAAGCCTCAAAATGTTCTCTTTGATGCAGATTTTGAAGCCCATTTGTCTGAATTTGGGTTGGATAGGTTGACAATGGGAAATCCAGCAGAAGCATCGTCTTCATCTACACCAGTTGGTTCGTTAGGGTATGTAGCACCAGAAGCTGCATTAACAGGACAAGCAACAAAAGAGGCAGATGTATACAGTTTTGGGATTGTGTTGTTGGAAATACTGACAGGGAGGAAACCAGTGATGTTCACACATGATGAGGATATAGTGAAGTGGGTGAAGAGGCAATTACAAAGGGGACAAATTTCAGAATTGTTGGAGCCTGGTTTGCTTGAGCTTGATCCAGAATCATCTGAATGGGAAGAGTTTTTGTTGGGTATCAAAGTTGCTCTATTATGCACAGCACCTGATCCTCTTGATCGACCATCTATCAATGACATTGTTTTCATGCTCGAAGGTTGTCGGGTCGGACCGGAGATACCATCCTCCGCTGATCCCACCACACTACCTTCCCCTACTTGA 3192 0.4464 MATTAIFLISIAVVANFTLTSTFAQSNNNVSHSEIQALTAFKLNLHDPLGSLDGWDPSTPSAPCDWRGILCFKNRVHELRLPRLQLTGPLSPSLSNLSQLRKLSLHSNNFNSSIPSSLSHCLFLRAVYLHNNKLSGNLPPPLLNLTNLQILNLAHNLLSGTIPGNLSTSLRFLDLSSNAFSGDIPANFTSKSQLQLINLSYNGFTGGIPVTIGALQRLEYLWLDSNNLHGTLPSALANCSSLVHLSAEDNAIGGLIPATMGTMPKLQVLSLSLNQLSGSVPTSLFCNEHTDWSLRIVQLGFNNLTGITKPQSGGKKCVSFLQILDLKENHIIRASFPFWLTNATSLRVLDLSGNSFSGVLPPDIGNLFRLEELRLSNNSLSGGVPISIVNCRVLRVLDLQGNKFSGPVPSFLGQLRSLKVLSLGGNLFTGSIPTSYGSLYELESLNLSNNNLTGILPEEIMQLGNMSALNLSNNRFSGQVSSHIGDLMALQVLNLSHCGFSGRVPSTLGNLMKLTVLDLSKQAFLVNCLLSFFGLPSLQVVALEENHLSGAVPEGFSSIVSLSISGAIPPEIGGCSQLEILQLQSNHLQANIPSQIPESLSKLSNLTELSLSSNQLTGEIPVDLSQIAGLKYLNLSNNNLEGEIPEMLGSRFNDPSVFAMNQRLCGKPLHKECANVRRRKRRRLIIFIGVAVAGLCLLALCCCGYVYSLLRWRNKLREGVTGEKKRSPASAGSGTDRSRGSGENGGPKLVMFNNKITYAETLEATRNFDEENVLSRGRYGLVFKASYNDGMVLSIRRLPDAFMDEGTFRKEAESLGKVKHRNLTVLRGYYAGPPPDVRLLVYDYMPNGNLGTLLQEASQQDGHVLNWPMRHLIALGIARGLAFLHSVPIVHGDVKPQNVLFDADFEAHLSEFGLDRLTMGNPAEASSSSTPVGSLGYVAPEAALTGQATKEADVYSFGIVLLEILTGRKPVMFTHDEDIVKWVKRQLQRGQISELLEPGLLELDPESSEWEEFLLGIKVALLCTAPDPLDRPSINDIVFMLEGCRVGPEIPSSADPTTLPSPT 1063
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi306g00029 1063 FunFam Leucine-rich repeat receptor protein kinase EMS1 208 311 - -
Sebi306g00029 1063 ProSiteProfiles Leucine-rich repeat profile. 441 462 IPR001611 GO:0005515
Sebi306g00029 1063 Gene3D Ribonuclease Inhibitor 31 187 IPR032675 -
Sebi306g00029 1063 Pfam Protein kinase domain 770 1037 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi306g00029 1063 Pfam Leucine Rich Repeat 345 367 IPR001611 GO:0005515
Sebi306g00029 1063 Pfam Leucine Rich Repeat 490 511 IPR001611 GO:0005515
Sebi306g00029 1063 ProSitePatterns Serine/Threonine protein kinases active-site signature. 889 901 IPR008271 GO:0004672|GO:0006468
Sebi306g00029 1063 Pfam Leucine rich repeat N-terminal domain 33 71 IPR013210 -
Sebi306g00029 1063 SMART LRR_typ_2 97 121 IPR003591 -
Sebi306g00029 1063 SMART LRR_typ_2 344 367 IPR003591 -
Sebi306g00029 1063 SMART LRR_typ_2 535 558 IPR003591 -
Sebi306g00029 1063 SMART LRR_typ_2 603 627 IPR003591 -
Sebi306g00029 1063 SMART LRR_typ_2 575 599 IPR003591 -
Sebi306g00029 1063 SMART LRR_typ_2 439 462 IPR003591 -
Sebi306g00029 1063 SMART LRR_typ_2 415 438 IPR003591 -
Sebi306g00029 1063 SMART LRR_typ_2 145 169 IPR003591 -
Sebi306g00029 1063 SMART LRR_typ_2 263 287 IPR003591 -
Sebi306g00029 1063 SMART LRR_typ_2 215 239 IPR003591 -
Sebi306g00029 1063 SMART LRR_typ_2 463 487 IPR003591 -
Sebi306g00029 1063 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 31 190 - -
Sebi306g00029 1063 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 845 1049 - -
Sebi306g00029 1063 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 316 408 - -
Sebi306g00029 1063 MobiDBLite consensus disorder prediction 721 748 - -
Sebi306g00029 1063 SMART serkin_6 768 1040 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi306g00029 1063 Gene3D Transferase(Phosphotransferase) domain 1 845 1049 - -
Sebi306g00029 1063 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 412 677 - -
Sebi306g00029 1063 Pfam Leucine rich repeat 416 476 IPR001611 GO:0005515
Sebi306g00029 1063 Pfam Leucine rich repeat 577 640 IPR001611 GO:0005515
Sebi306g00029 1063 Gene3D Phosphorylase Kinase; domain 1 742 844 - -
Sebi306g00029 1063 ProSiteProfiles Protein kinase domain profile. 768 1050 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi306g00029 1063 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 335 1041 - -
Sebi306g00029 1063 Gene3D Ribonuclease Inhibitor 293 676 IPR032675 -
Sebi306g00029 1063 ProSiteProfiles Leucine-rich repeat profile. 629 651 IPR001611 GO:0005515
Sebi306g00029 1063 SUPERFAMILY Protein kinase-like (PK-like) 747 1052 IPR011009 -
Sebi306g00029 1063 PRINTS Leucine-rich repeat signature 442 455 - -
Sebi306g00029 1063 PRINTS Leucine-rich repeat signature 603 616 - -
Sebi306g00029 1063 Gene3D Ribonuclease Inhibitor 188 288 IPR032675 -
Sebi306g00029 1063 SUPERFAMILY RNI-like 298 662 - -
Sebi306g00029 1063 SUPERFAMILY L domain-like 32 357 - -
Sebi306g00029 1063 FunFam Putative LRR receptor-like serine/threonine-protein kinase 732 844 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi306g00029 Sebi-Chr306 660513 663933 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi306g00029 1 1062 Receptor kinase-like Gene Family AT1G75640 60.646 0.0 1264
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-3 Sebi306g00029 Pkinase 2.3e-32 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi306g00029 - - qsa:O6P43_033635 1248.8