Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi306g00023 ATGAAGATCCAGTGCGACGTCTGTAACAAACACGAGGCCTCTTTATTCTGCACAGCCGACGAAGCTGCCTTATGTGACGGCTGCGACCACCGTGTCCACCACGCCAACAAACTCGCCTCCAAACACCAACGCTTCTCTCTCAACCACCCTTCTCCAAAGCATTTCCCTCTCTGCGATGTTTGCCGGGAGAGAAGAGCTTTTGTGTTTTGTGAACAAGATAGAGCGATTTTATGCAAAGAGTGTGACTTGCCGATTCATTCTGCCAACGAACTCACTAAGAAGCATAATAGGTTTCTTCTTACTGGGATTAAGCTCTCTGCTGCTGCTACTCTTTATTCTTCATCACCACCTTCTAATTTCAATTCCAAGTCTTGTGCTGATGACGATGACAACAATAATTCACTTCCACCGTTGATTGCCAAGACTTGTTCTCCCCCTTCAATATCAACGGCGGTGACGTCAGTGCCTCCGAATGAAAAAGAAGGTTTCACAAGTAGCAGCATATCCGAGTACTTGATTAACACTATTCCAGGCTGGCAGTTTGAAGATTTCCTTGATTCGCCTTCTCTTCCCTTTGCTCTCTCTAAGAATAATGGTGATGGTATGTTAGTGAATGGTGGTGATATTGAGAGAAATATGGTTTCGTTCTCGGCAGAGAGCATTGGTGGTACTGGGATCTGGGTTCCTCAAGCACCATCTTCAACACAAATGATTGGATACAGAGAAACAAAGGAAGCCACCAACAACAGATCAAGGTTGAGGGATGATAATTTCATAGTTCCACAGATGAGCCCTCCCAACACTACTACTGCCTCCAAGAGATCCAGACTTTTATGGGGCCATGAGAATGGATTGATGGATGCAAAGATTCCACATGCGTATTACGGGAATCACGTGCCATGGTAA 906 0.4536 MKIQCDVCNKHEASLFCTADEAALCDGCDHRVHHANKLASKHQRFSLNHPSPKHFPLCDVCRERRAFVFCEQDRAILCKECDLPIHSANELTKKHNRFLLTGIKLSAAATLYSSSPPSNFNSKSCADDDDNNNSLPPLIAKTCSPPSISTAVTSVPPNEKEGFTSSSISEYLINTIPGWQFEDFLDSPSLPFALSKNNGDGMLVNGGDIERNMVSFSAESIGGTGIWVPQAPSSTQMIGYRETKEATNNRSRLRDDNFIVPQMSPPNTTTASKRSRLLWGHENGLMDAKIPHAYYGNHVPW 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi306g00023 301 Pfam B-box zinc finger 56 96 IPR000315 GO:0008270
Sebi306g00023 301 CDD Bbox1_BBX-like 5 47 - -
Sebi306g00023 301 CDD Bbox1_BBX-like 57 100 - -
Sebi306g00023 301 ProSiteProfiles Zinc finger B-box type profile. 53 100 IPR000315 GO:0008270
Sebi306g00023 301 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Sebi306g00023 301 Gene3D Classic Zinc Finger 1 96 - -
Sebi306g00023 301 FunFam B-box zinc finger protein 21 1 98 - -
Sebi306g00023 301 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 268 - -
Sebi306g00023 301 SMART bboxneu5 4 47 IPR000315 GO:0008270
Sebi306g00023 301 SMART bboxneu5 53 100 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi306g00023 Sebi-Chr306 513475 523063 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi306g00023 1 279 C2C2-CO-like Transcription Factor Family AT1G75540 40.476 1.53e-69 217
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Sebi306g00023 zf-B_box 4.4e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi306g00023 - - gmx:100794842 335.88