Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi306g00021 ATGGCTCGAGGTAAGATCCAGATCAAGAGGATAGAGAACACCACCAACCGCCAGGTCACTTACTCTAAACGACGGAATGGCCTTTTCAAAAAGGCCAACGAGCTCACCGTTCTCTGCGATGCCAAAGTTTCCATTATTATGTTCTCCAGCACGGGCAAGCTCCACGAGTACATTAGCCCCTCCACCTCAACAAAGCAGTTCTTCGATCAGTATCAGATGACTGTAGGAACTGATCTGTGGAACTCTCATTATGAGAATATGCAAGAGACCTTGAAGAAATTGAAAGACGTGAATAGGAATCTTCGCAAGGAGATTAGGCAGAGGATGGGGGATTGTCTGAACGACCTGAGCATTGAAGACCTTAGGCTCCTTGAGGAAGAAATGGACAAGGCCGCCAAGGTTATTCGTGAGCGTAAGTATAAGGTGATAACCAATCAGATTGACACCCAGAGGAAGAAGTTTAATAACGAGAGAGAGGTGCACAACAGACTCCTGCGTGACTTAGATGCAAGAGCGGAAGATCCACGTTATGATTTGATGGACAATGGAGGGGATTATGAGTCAGCTGTGATCGGATTCTCAAATTTGGGTCCGCGCATGTTTGCGTTGAGCCTACAGCCTAGTCATCCTAATGCTCACAGCGGGACAGGGTCTGATCTTACCACTTACCCCTTGCTTTTCTAG 684 0.4708 MARGKIQIKRIENTTNRQVTYSKRRNGLFKKANELTVLCDAKVSIIMFSSTGKLHEYISPSTSTKQFFDQYQMTVGTDLWNSHYENMQETLKKLKDVNRNLRKEIRQRMGDCLNDLSIEDLRLLEEEMDKAAKVIRERKYKVITNQIDTQRKKFNNEREVHNRLLRDLDARAEDPRYDLMDNGGDYESAVIGFSNLGPRMFALSLQPSHPNAHSGTGSDLTTYPLLF 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi306g00021 227 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Sebi306g00021 227 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 166 - -
Sebi306g00021 227 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Sebi306g00021 227 FunFam MADS-box transcription factor 16 13 97 - -
Sebi306g00021 227 Pfam K-box region 81 167 IPR002487 GO:0003700|GO:0005634|GO:0006355
Sebi306g00021 227 Coils Coil 84 107 - -
Sebi306g00021 227 Gene3D - 13 90 IPR036879 GO:0003677|GO:0046983
Sebi306g00021 227 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Sebi306g00021 227 Coils Coil 151 171 - -
Sebi306g00021 227 CDD MADS_MEF2_like 2 80 IPR033896 GO:0000977|GO:0045944
Sebi306g00021 227 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Sebi306g00021 227 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Sebi306g00021 227 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Sebi306g00021 227 ProSiteProfiles K-box domain profile. 84 174 IPR002487 GO:0003700|GO:0005634|GO:0006355
Sebi306g00021 227 SUPERFAMILY SRF-like 3 95 IPR036879 GO:0003677|GO:0046983
Sebi306g00021 227 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi306g00021 Sebi-Chr306 434272 438103 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi306g00021 1 226 MADS-box Gene Family AT3G54340 57.328 1.05e-93 272
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Sebi306g00021 K-box 2.1e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi306g00021 K09264 - gmx:547720 421.009