Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi306g00019 ATGGCTGGGTTGTTCTCTCTAGGTGGAAGGGGAGGCCCACAAAACAAGATAGGAGGAAAAGAAGAAAACAATAACAGTAGTAGCCTATTGTTGTTCAGGAACGAGGAGATCTACAACAAGGGGCTGGAGATATGGCCACAGCCCTATCAGCCACAACACCAAAACTACTATGCGTTTGGGGTGGGTCCTAGTCGCATCAACGTGAACGAGGACGACGTCGTCTCCTCCTCCTCCTTGACTGTGGCAACCAAGCTAAGAAAGACTGTTCACATCTCAGATGCAGAACTTGCTGTAAGAGCCGAGGGTTTCAGTGCCAAACCCACGTCAAGAGCACTTGGGTTCCTGCTGCCAAACGCCGCGAACGACAACAACAACTCGCTGCGTTGCAGCAGCAGCAACAATTGCGGGGGAGAGAATCCTAAACGACATCAAGCTGCAGGCACTTCTCTTGCCTGCGCTCCACCACCCATCACTACTACTTCCACAGGGTTAGAGTTGGGGCAATTCCCACCTGAAGTGAGCTCTTCAGCGGTGTTTCGGTGTGTAAAGGTTAGTGCAGTGGACGCTCCAGATGAGCAATGCGCGTATCAAACCACTGTCCACATTGGTGGCCATGTTTCAAAGGAATTCTATATGATCAAGGTCCAGAAAGTTCTTATACAAGTACAGCTGTTGAGGGTTCCTCCAGTGGAGGTGGAGGTGAAGCTCATCACAACTTGGTTTCATAACCGCTGCAACTGCAACCACAACCACAGCCACAGGCAGTGGCAATCCATTTGA 780 0.5064 MAGLFSLGGRGGPQNKIGGKEENNNSSSLLLFRNEEIYNKGLEIWPQPYQPQHQNYYAFGVGPSRINVNEDDVVSSSSLTVATKLRKTVHISDAELAVRAEGFSAKPTSRALGFLLPNAANDNNNSLRCSSSNNCGGENPKRHQAAGTSLACAPPPITTTSTGLELGQFPPEVSSSAVFRCVKVSAVDAPDEQCAYQTTVHIGGHVSKEFYMIKVQKVLIQVQLLRVPPVEVEVKLITTWFHNRCNCNHNHSHRQWQSI 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi306g00019 259 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 133 210 IPR007818 GO:0003700|GO:0006355
Sebi306g00019 259 Pfam Domain of unknown function (DUF702) 132 209 - -
Sebi306g00019 259 NCBIfam LRP1 C-terminal domain 168 210 IPR006511 -
Sebi306g00019 259 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi306g00019 Sebi-Chr306 339581 340993 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi306g00019 136 208 C2H2 Transcription Factor Family AT5G66350 58.442 2.95e-17 78.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Sebi306g00019 DUF702 2.7e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi306g00019 - - jre:108991308 131.339