Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi305g00045 ATGGCTATGGCATTTGTGGGAGAGGCATTCCTTTCAGCTTCTGTTGAAGTGTTGTTAGAGAGAATAATTTCCCATGAGTTCCTAGACTTTTTTCATAGAAAGGAGCTTGATGTTTCACTCCTCAAAAAGCTGAAAATAACACTGCTGAGTCTTCAAGCTGTATTGAATGATGCTGAGGAGAAACAAATCACCAACCCTGCTGTCAAGGAATGGCTGGATGAGCTCAGAGATGCTCTCTACGATGCTGATGATTTGTTGGATGAAATCAACTTTGAGGCTTTGAGATGCAAACTCGAAGCTGGGTCTCAAAGTCAACCCATTAGTGACCAGGTTCTGAAATTCCTTTTCTCTTCTTTCAAACGGTTTTCTGGGGTCATTAATCCTGAAATACAATCACTTTTTCAAAGATTAGAGCAATTTTTAGTCCAAAAAGACATCCTTGGACTGAAAGAAGGTGCTTCTGGCCGAGTTTGGCATGGAACACCCACTAGTTCTGTGGTAGATGAATCTGCTATTTATGGTAGAGACCATGACAAAAAGATACTTAAAGATTACTTGTTGTCACAAGATGATGGTGGCAGTGGCAGTAAAATTGGAGTGGTTACCATTGTGGGCATGGGTGGACTTGGTAAAACAACCCTTGCTAAACTCCTTTACGGTGATCACGAAGTGAAAGTGAAATTTGATTTGAAAGCATGGGCATTTACTTCAAAGGATTTTGATGTTTGCAAGGCCATTTTTAGAGCTGGGGAGATGGGAAGTAAGATCATCATCACAACTCGGGATGAAAGTGTAGCATTAGCCATGCAAACCTATCTTCCTATCCACTATTTGAGATCTCTTCAAAGTGAAGATTGCTGGTCTTTACTTGCCCATCATGCATTTGGACCAAATAACTGCAGGAAACAATCCAAACTAGAAGTAATTGGCAAAGAAATTGCAAAAAGATGTGGTGGCTTACCATTAGCTGCAGAAGCCCTTGGGGGTCTTCTCCGCACCAAATTATTGGAAAAGGAATGGAATAAGGTATTAAAAAAAGGCTTAGTACATCAGTCCAAAAGTGACAAAACTATGGAAGAAGTGGGTGATGAATACTTTGATGAATTAGTATCTCGGTCACTAATACGTCGACAGACTGTCAATGACAAAGAAAGCTTTATGATGCATGACCTCATCAATGAATTAGCCACAATTGTTTCATCTGCATATTGTATGAGGAATAAGGATCCAAAGCCACATGAAAGTCTTGAAAGAGCTCGTCATTTGTCATACAACAGAGGGAAGTATGACTGCTTCAATAAATTTAATACATTTTATGGATCAATGTGTCTTCGTACTTTTCTAGCCTTACCAATAAGACATTGGTGGTCATCAAAATATCCTAATTTGAGAAGCCATTACCTATCTAGCAAGTTATTATTTGACTTGTTGCCAGCAATGAGACGGTTGAGGGTGTTATCTTTGTCACACTATAATAATATCACTGAGTTGCCTAACTCTCTCGGAAATTTAATACATCTGCGATACTTAGATCTCTCTAACACTGAAATTGAAAGATTGTCGGAAGTAATATGCAAGCTCTACAATCTGCAGACCCTGTTGTTGTCCAAATGTTGCTCACTCACTGAATTACCTGAGGACATTGGAAATTTGGTTAATCTACGCCACCTTGATGTCAGTGATACTAAATTGAAGGAGATGCCTATTCAAATAGCCAAACTTCAAAATCTTCAAACTCTGTCCACCTTTGTTGTCAGCAAACAGCAAGATGGATTGAAGGTTGGAGAGATGAGAAAATTCCCCCATTTACAAGGGAAACTTTCAATCTTAAAGTTACAAAATGTTACTGATCCGTCTGATGCCTTTCAAGCCAACTTGAAGAAGAAAGAACAAATTGATGAGTTGACATTAGAATGGGATTGCAATGCTACTGAAGACTCACAAATGGAAAGGCTTGTACTTGAACAGCTGCAGCCCTCAAGAAATTTGAAGAAACTCACCATTCATTTCTATGGTGGAACCACCTTTCCAAACTGGTTAGGAGATCTCTCATTTGGCAACATGACGAGTTTGCGCAGCAGTGGCTGTGATCATTGTTGGTCGCTGCCTCCCCTAGGACAGTTACTTTGCCTCAAAGAACTCATAATTTCTGGACTAAAATCAATAAAGACAGTTGGTTCTGAATTCTATGGAAGTAGTTCCCCTTCTTTTCATCCATTTCCCTCATTGGAGATTCTGAGCTTTGAGGAGATGCCAGAGTGGGAGGAATGGGAGTTGATTGGAGGTACAGCTATAGAATTTCCTAGTCTAAGGCGTTTGTTTCTATGTGATTGTCCCAAACTCAAAGGAAACATACCAAAAAACCTTCCTTCCTTAGTTGAACTTGAGTTGTCCCAATGTCCTCTACTTGAGTCACAGCATCCATATGAGGTGGATAACAGCAACATTGGAAGGCCATCACATCTTGGGTGGATGATGCTTGGCCTTAATTCTCTTAGAGAGTTGACTATATCTGGCATTCCCTCTCTGACATACTTCCCAATAGATGTTCTGCCCACAACAATACAATCTCTTACTTTCCTTTCTTGTGAGAATCTGGAATCTTTACCTCATGAATCCTTGCCGAGTTACACGTCACTTGACAAATTGCAAATATTCAATAGTTGTGATTCAATGACATCCTTTCAGTTAGGCTGTCTGCCTGTACTCAAAAGTCTCTTCATCTTGGGTTGTAAAAATCTGAAATCTATTTCTGTTGCAGAAGATGCATCCCAAAGTCTCTCTTTTCTTCAAAGTTTATCCATATATGCTTGTCCTAATCTTGAGTCATTTCCACTAGGTGGACTGGCCACCCCTAACCTCAACCATTTCTTGGTGTCAAGTTGTCGTAAGCTTAAGTCACTACCAGAACCAATTAACACCCTATCTGGCCTTTATCAATTGAGTATTTATGGGCTTCCAAATCTGCAGGCTTTTGCACAACCTGTTGTCAAAAGACTGAAGGCTATGGAGACAAAAATGTATTGGCCTAAGCCTCCTTCAATCTGCAGTAGCATGCTACTCACAAACAAGGTGGTAGTCCAATTACCAAGCATGACTTGGCAAAAGCTCGGTTGCTACCAACTGATTTTCTGGCTGACTTGCTCAAGCCTATTGCTATGGGAATGA 3168 0.4018 MAMAFVGEAFLSASVEVLLERIISHEFLDFFHRKELDVSLLKKLKITLLSLQAVLNDAEEKQITNPAVKEWLDELRDALYDADDLLDEINFEALRCKLEAGSQSQPISDQVLKFLFSSFKRFSGVINPEIQSLFQRLEQFLVQKDILGLKEGASGRVWHGTPTSSVVDESAIYGRDHDKKILKDYLLSQDDGGSGSKIGVVTIVGMGGLGKTTLAKLLYGDHEVKVKFDLKAWAFTSKDFDVCKAIFRAGEMGSKIIITTRDESVALAMQTYLPIHYLRSLQSEDCWSLLAHHAFGPNNCRKQSKLEVIGKEIAKRCGGLPLAAEALGGLLRTKLLEKEWNKVLKKGLVHQSKSDKTMEEVGDEYFDELVSRSLIRRQTVNDKESFMMHDLINELATIVSSAYCMRNKDPKPHESLERARHLSYNRGKYDCFNKFNTFYGSMCLRTFLALPIRHWWSSKYPNLRSHYLSSKLLFDLLPAMRRLRVLSLSHYNNITELPNSLGNLIHLRYLDLSNTEIERLSEVICKLYNLQTLLLSKCCSLTELPEDIGNLVNLRHLDVSDTKLKEMPIQIAKLQNLQTLSTFVVSKQQDGLKVGEMRKFPHLQGKLSILKLQNVTDPSDAFQANLKKKEQIDELTLEWDCNATEDSQMERLVLEQLQPSRNLKKLTIHFYGGTTFPNWLGDLSFGNMTSLRSSGCDHCWSLPPLGQLLCLKELIISGLKSIKTVGSEFYGSSSPSFHPFPSLEILSFEEMPEWEEWELIGGTAIEFPSLRRLFLCDCPKLKGNIPKNLPSLVELELSQCPLLESQHPYEVDNSNIGRPSHLGWMMLGLNSLRELTISGIPSLTYFPIDVLPTTIQSLTFLSCENLESLPHESLPSYTSLDKLQIFNSCDSMTSFQLGCLPVLKSLFILGCKNLKSISVAEDASQSLSFLQSLSIYACPNLESFPLGGLATPNLNHFLVSSCRKLKSLPEPINTLSGLYQLSIYGLPNLQAFAQPVVKRLKAMETKMYWPKPPSICSSMLLTNKVVVQLPSMTWQKLGCYQLIFWLTCSSLLLWE 1055
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi305g00045 1055 Gene3D - 159 250 IPR027417 -
Sebi305g00045 1055 Coils Coil 41 61 - -
Sebi305g00045 1055 Pfam NB-ARC domain 238 351 IPR002182 GO:0043531
Sebi305g00045 1055 Pfam Rx N-terminal domain 10 103 IPR041118 -
Sebi305g00045 1055 SMART LRR_typ_2 551 574 IPR003591 -
Sebi305g00045 1055 SMART LRR_typ_2 504 527 IPR003591 -
Sebi305g00045 1055 SMART LRR_typ_2 480 503 IPR003591 -
Sebi305g00045 1055 Gene3D Ribonuclease Inhibitor 455 814 IPR032675 -
Sebi305g00045 1055 Gene3D - 280 369 IPR042197 -
Sebi305g00045 1055 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 163 351 IPR027417 -
Sebi305g00045 1055 ProSiteProfiles Leucine-rich repeat profile. 482 504 IPR001611 GO:0005515
Sebi305g00045 1055 Gene3D - 37 126 - -
Sebi305g00045 1055 Pfam Leucine Rich repeats (2 copies) 482 522 IPR025875 -
Sebi305g00045 1055 SUPERFAMILY RNI-like 732 990 - -
Sebi305g00045 1055 Gene3D Ribonuclease Inhibitor 815 1003 IPR032675 -
Sebi305g00045 1055 SUPERFAMILY L domain-like 388 804 - -
Sebi305g00045 1055 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 57 828 990 - -
Sebi305g00045 1055 PRINTS Disease resistance protein signature 787 803 - -
Sebi305g00045 1055 PRINTS Disease resistance protein signature 200 215 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi305g00045 Sebi-Chr305 823792 827645 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi305g00045 494 589 WRKY Transcription Factor Family AT4G12020 41.237 5.61e-09 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi305g00045 - - vun:114184488 1184.86