Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi304g00021 ATGCTTCCTATGCGTCAGAAATCGCAGGTTGGAGGACTACAGACATCACTATCTCTAGTTTCTTCAGATCCTCACCTCTCTCCTGATGAACCTAGATCAAACTCTGACAATCTCCGTGAATCTCCAACTGAAAGTGCCAGTTCTCAAGAAACTTGGCCTACAGCTGATGCAACCGCGGCAAAGAAGATGGAGAATGGGAAAGCAGAGATTAATTGCCTTGAGAAGTCAGTTATTCATCGTGTTTCTAGTGCAGACAAAATTACTCTTCAGGACATTGCAAGAGAAAGTGTTGATATAATCTGTGAGAAAATTCATCACCTTCCCGAGGAGTTTCTAGATGAGATGAAAAATGGTCTTCGAGTTATCCTTGAGGGTGGAAATGGTTCACAACATAGGGAGGAGTTTTTCATTTTGCAGAAGCTTGTGCAGAGTAGAACTGATTTAACACCCAAGACACTGATTAGAGCACATCGTGCGCAGCTTGAAATTCTTGTTGCAATCAATACTGGAATTCAGGGATTTTTGCATCCTAGCATCAGTCTATCACAGACTTCCCTGGTTGAAATCTTTGGGTATAAGAGATGCAGAAACATAGCATGCCAAAGCCAGCTTCCAGCTGATGATTGTACCTGTGAAATATGCACCAACAGTAATGGTTTCTGCAATCTTTGCATGTGTGTGATCTGCAACAAGTTTGACTTTGAAGTGAATACATGCCGCTGGATTGGATGTGATTTGTGCTCTCATTGGACTCACACAGATTGTGCCATCCGTGAGCAACTTATTTGCACGGGCCCTTCTGTGAAGAGTGGAGCAGGACCAAGTGACATGGTTTTTAGGTGTCAAGCATGCAATAGGACATCAGAACTGTTGGGTTGGGTTAAAGATGTCTTCCAGCACTGTGCACCATCTTGGGAAGGAGAGGCCTTCATGAGAGAACTGGATTATGTAAGTAGGATCTTTCATGATAGTAAAGACCCTCGAGGGAGGAAACTACTTTGGAAATGTGATGATCTCAAGGAAAAATTGAAAAGTAGAAAAATGGACTCAAAGGCTGCTTGCAGGGCAATATTGATGTTTTTCCAAGAGCTTGAGGTGGACTCTCCAAAGGGCCTGGAAAATGGAGAAAGTGGAAGGTTGATTGCACCACTGGATGCATGCAATAGAATTGCTGAAGTGGTGCAGGAGGCTATAAGAAAGATGGAAATGGTAGCTGATGAGAAGATGAGAATGTTCAAGAAGGCTCGCTTGGCTCTTGATGCTTGTGATCGTGAACTAGCAGACAAAGCCAGGGAAGTGACAGAACTCAAGATGGAGAGGCAGAAAAAGAAGTTGCAGATAGAAGAACTTGAGAAAATTGTGAGGCTTAAAAATGCAGAGGCTGATATGTTCCAATTAAAGGCTAATGAGGCTAAACGAGAGGCTGAGAGGCTTCAGAGGATTGCACTTGCAAAACAAGACAAATCAGAGGAAGAATTCACTAGCAATTACCTGAAACAACGATTAAGTGAGGCTGAGGCTGAGAAGCAATACCTGTACGAGAAGATCAAATTGCAGGAGAGTTCTCGTGTTTCACAGAGCAGTGGTGGTAGTGGTGACCCCTCTCAAATGCTGATGTATTCAAAAATTCATGATCTGCTGTATAGTGTTCCTTCCAAGGCAGACGGCCAGCCTAATTTACGCCACCCGTTCCGGACAAATCCGTAA 1707 0.4353 MLPMRQKSQVGGLQTSLSLVSSDPHLSPDEPRSNSDNLRESPTESASSQETWPTADATAAKKMENGKAEINCLEKSVIHRVSSADKITLQDIARESVDIICEKIHHLPEEFLDEMKNGLRVILEGGNGSQHREEFFILQKLVQSRTDLTPKTLIRAHRAQLEILVAINTGIQGFLHPSISLSQTSLVEIFGYKRCRNIACQSQLPADDCTCEICTNSNGFCNLCMCVICNKFDFEVNTCRWIGCDLCSHWTHTDCAIREQLICTGPSVKSGAGPSDMVFRCQACNRTSELLGWVKDVFQHCAPSWEGEAFMRELDYVSRIFHDSKDPRGRKLLWKCDDLKEKLKSRKMDSKAACRAILMFFQELEVDSPKGLENGESGRLIAPLDACNRIAEVVQEAIRKMEMVADEKMRMFKKARLALDACDRELADKAREVTELKMERQKKKLQIEELEKIVRLKNAEADMFQLKANEAKREAERLQRIALAKQDKSEEEFTSNYLKQRLSEAEAEKQYLYEKIKLQESSRVSQSSGGSGDPSQMLMYSKIHDLLYSVPSKADGQPNLRHPFRTNP 568
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi304g00021 568 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 232 252 IPR004082 -
Sebi304g00021 568 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 186 207 IPR004082 -
Sebi304g00021 568 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 103 125 IPR004082 -
Sebi304g00021 568 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 145 160 IPR004082 -
Sebi304g00021 568 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 160 175 IPR004082 -
Sebi304g00021 568 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 448 468 IPR004082 -
Sebi304g00021 568 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 305 324 IPR004082 -
Sebi304g00021 568 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 487 509 IPR004082 -
Sebi304g00021 568 Coils Coil 419 488 - -
Sebi304g00021 568 MobiDBLite consensus disorder prediction 38 55 - -
Sebi304g00021 568 Pfam PHD - plant homeodomain finger protein 195 318 IPR032881 -
Sebi304g00021 568 SMART PHD_3 225 285 IPR001965 -
Sebi304g00021 568 MobiDBLite consensus disorder prediction 1 55 - -
Sebi304g00021 568 Pfam Coiled-coil region of Oberon 413 547 IPR032535 -
Sebi304g00021 568 PIRSF UCP025218 1 554 - -
Sebi304g00021 568 PANTHER VERNALIZATION-INSENSITIVE PROTEIN 3 27 549 IPR004082 -
Sebi304g00021 568 CDD PHD_OBE1_like 225 284 IPR047578 -
Sebi304g00021 568 MobiDBLite consensus disorder prediction 8 23 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi304g00021 Sebi-Chr304 1113056 1115375 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi304g00021 195 297 PHD Gene Family AT5G57380 32.075 1.48e-09 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi304g00021 - - gmx:100781890 1029.24