Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi304g00019 ATGCAGCAGCCATCAAACCACCCTGGTGGCAAGAGTGACTTGAGTGGATTTGCACACAGTTGGCAAGAGTACTCGAGCAAACTCGGCTGGACTCGGGTAGAATCGCTCAGAATCGCGAGTCTATGGGCAAGTCAGCGAGTTTGCACCAGGTCAATTTTTTGCGCCCTAAATGCCCAAAACGGCGTCATTTCAGTAAGGGTTTCTAGTCTCATCTCTATTTTCTTCGATCTTTCACTTTCTGCATACGAAAAACACACTTCTTCTCCTTCCAACGTTCTTCGATATTCCTCTGTTCAAGCTCCCACGACTCCGACCAGCACTGTTTTGTCCGTCCGGTGTCGTCCTTGCAGTTTCGGCGTCGTCCTTGCAGTTTCCGGCGTCGTCCCTACAGTTTCCGGCGAGCTGTTCGTCCACGCGTTTTCCTGCTTGTCAGCGCCGTCCATTCACCTTCGTGTGCTTCATCTCCACGCCTGGAAAGGTCTGTTGTGTGTTTATTTGAATTGGGCAGATCTGTTGTGTTGTTTTGGGGTGTTTATTTGGTCGGTTAGTGTTACTCCTATGGTAGACTCTTACGAGTCTACGAGTCGAGTTTACGAGTCGAGTCTACGGAGCTCCACGAGTTTGCGTAGACTCTCGACAAAAGGAAAAAGGATGGAGAAAGTGCCTGAGATTGAAGAAATTGCTGAGCCACCAGCTTTACCTCCACCACCTCCTGATGTGCTGCCTAATATGGAAACAGAACAAATGGCTCCTACAAAGTATTCTATTATCAGTAGGCTGGGGGTTGGGACCACAGGAAAATGCATACCTTTGCTTGCCAATCTTTTCAAAGTTGCTTCTAATGCTCCTGATGCAATTTTTTTCCAGTATAGTGTTACTATTACTTCAGAAGATAAAAGAACTGTTGAAAGCAAGGTCATTAGGAGAAAAGTGATTGAATGGCTTTATCAAATGTACTCTTCTGAACTTGGTGGTAAAAGGTTTGCATATGATGGAGAGAAAACTTTGTACACAGTGGGTCCTCTGCCACAAAATAAATTTGAGCACAAAATATTGCTTGAGGAATCATTGCAAAGTGTAGTGCTGAGAACCCTGGTGCTAATGGAAGCCCTCGCGAGGAAACTAAAAGGTTTAAAACGTTCTTTTCAGTCAAAGGCATTCATGGTGGAGATAAGTTTTGCTACTAAAATACCCCTGCAGTCTGTTGCTCTTTCCCTCAAAGGGATTGAGTTAGATGCCAATTGTCAGGATGCTTTGAGAGTGCTTGATATTGTACTGAGGCAGCGAGCAGCTAACAGAGGGTGTCTCTTGGTAAGGCAATCTTTCTTTCATGATGACTCGAGTAATTTCACTGATATTGGAGGTGGAGTAACAGGAGTTCAGGGTTTACATTCCAGTTTTCGCCTTACAGAGGGAGGATTGTCTCTCAATATGGATGTGTCCACAACGGTGATCTTAAAACCTGGACCCGTAATTGATTTTCTCCTATCCAACCAGAATGTGAGGGAACCCCGTTATATTGACTGGGCGAAGGCTGTAGGAAATTATTGCTACGATGATGACCCTGTTCTTGGTGCATGTGGCATTTCTGTTGATAAGCAATTGACTCCGGTTGAAGGTCGGGTTCTTGAGACACCAAAGACACTCCTTCAACCATCACACATTGATTTTTGGGCTGTTGTCAACTTTTCTGCACCTTGTGATACTAGTTACATAACAAGGGAGCTGATCAAATGTGGAATGAGCAAGGGCATTAACATTGAACGACCATATACTTTAATAGAGGAAGAATCACAGTTGAGAAAATCTAACCCTGTTGCAAGGGTTGAAAAGATGTTTGACCTGCTTATATCAAAACTTACTAAAGAACCAAAGTTGATTCTCTGTGTCTTGCCAGAGAGGAAAAATTGTGACATTTACGCTGGGAGGTATAAATTCTCTGCTGACAATAGAGCATTCTGGGAACTTCCCCTGATTAAAGATACCCCAACAATGATTTTGGGGATGGATGTTTCTCATGGTTCCCCTGGTCAGTCACATATTCCATCAATAGCAGCGGTAAGGTTGTCGGATCTCGGCGTTTGGCCTCTGATTTCAAGGTATAGAGCATCTGTGAGAACACAATCATCCAAGGTGGAGATAATTAATGCTCTATACAAGCCTTTGGAGAATGGGAATGATGATGGTATTATCAGTACTCATGAAAGCCTTGAGCATTATGGTAGTATGGTGGATGGGGTGGAAGATGAGAAATATGTGGAGAAAGAGAGTTAG 2274 0.4402 MQQPSNHPGGKSDLSGFAHSWQEYSSKLGWTRVESLRIASLWASQRVCTRSIFCALNAQNGVISVRVSSLISIFFDLSLSAYEKHTSSPSNVLRYSSVQAPTTPTSTVLSVRCRPCSFGVVLAVSGVVPTVSGELFVHAFSCLSAPSIHLRVLHLHAWKGLLCVYLNWADLLCCFGVFIWSVSVTPMVDSYESTSRVYESSLRSSTSLRRLSTKGKRMEKVPEIEEIAEPPALPPPPPDVLPNMETEQMAPTKYSIISRLGVGTTGKCIPLLANLFKVASNAPDAIFFQYSVTITSEDKRTVESKVIRRKVIEWLYQMYSSELGGKRFAYDGEKTLYTVGPLPQNKFEHKILLEESLQSVVLRTLVLMEALARKLKGLKRSFQSKAFMVEISFATKIPLQSVALSLKGIELDANCQDALRVLDIVLRQRAANRGCLLVRQSFFHDDSSNFTDIGGGVTGVQGLHSSFRLTEGGLSLNMDVSTTVILKPGPVIDFLLSNQNVREPRYIDWAKAVGNYCYDDDPVLGACGISVDKQLTPVEGRVLETPKTLLQPSHIDFWAVVNFSAPCDTSYITRELIKCGMSKGINIERPYTLIEEESQLRKSNPVARVEKMFDLLISKLTKEPKLILCVLPERKNCDIYAGRYKFSADNRAFWELPLIKDTPTMILGMDVSHGSPGQSHIPSIAAVRLSDLGVWPLISRYRASVRTQSSKVEIINALYKPLENGNDDGIISTHESLEHYGSMVDGVEDEKYVEKES 757
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi304g00019 757 Gene3D - 546 651 - -
Sebi304g00019 757 SUPERFAMILY PAZ domain 270 503 IPR036085 GO:0005515
Sebi304g00019 757 Gene3D - 656 754 IPR036397 GO:0003676
Sebi304g00019 757 Pfam Argonaute linker 1 domain 438 485 IPR014811 -
Sebi304g00019 757 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 512 718 - -
Sebi304g00019 757 SMART DUF1785_2 436 488 IPR014811 -
Sebi304g00019 757 Pfam Argonaute linker 2 domain 514 547 IPR032472 -
Sebi304g00019 757 Pfam N-terminal domain of argonaute 269 426 IPR032474 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi304g00019 Sebi-Chr304 1027169 1034656 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi304g00019 656 720 Eukaryotic Initiation Factors Gene Family AT1G48410 44.615 6.16e-09 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi304g00019 K11593 - cpap:110819742 529.25