Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Sebi303g00065 | GTAACTGGAGATGTACGTGTCATATTCTATGAGAAAATGATTGGAGGCCGTCTTTTCTACTGCTGTTTTAATACAGCTTTTATTAGGAACAGCTTACTACAGCTCACATTAAAGGACTTGGACAAAGTTGGGAAGAAAGGAAGATCAATATGTGGCCCTACATTCTGCTTAGAATTACTATTTGGTCCTGCTAATAATACAGGATATTCATCATCAAGTATATCCATTGGTGACAATTCTAGTTATGATTCATTTTAA | 258 | 0.3527 | VTGDVRVIFYEKMIGGRLFYCCFNTAFIRNSLLQLTLKDLDKVGKKGRSICGPTFCLELLFGPANNTGYSSSSISIGDNSSYDSF | 85 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Sebi303g00065 | 85 | Pfam | C2 domain of PTEN tumour-suppressor protein | 1 | 61 | IPR014020 | - | |
| Sebi303g00065 | 85 | Gene3D | - | 1 | 67 | - | - | |
| Sebi303g00065 | 85 | PANTHER | PHOSPHATASE WITH HOMOLOGY TO TENSIN | 1 | 70 | - | - | |
| Sebi303g00065 | 85 | SUPERFAMILY | C2 domain (Calcium/lipid-binding domain, CaLB) | 1 | 63 | IPR035892 | - | |
| Sebi303g00065 | 85 | ProSiteProfiles | C2 tensin-type domain profile. | 1 | 64 | IPR014020 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Sebi303g00065 | Sebi-Chr303 | 1008869 | 1009858 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Sebi303g00065 | 1 | 64 | Protein tyrosine phosphatase (PTP) family | AT5G39400 | 70.312 | 8.26e-27 | 99.0 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Sebi303g00065 | K01110 | - | vum:124825570 | 135.576 |