Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi303g00047 ATGGATGGGCCAGCTGGTCGAGGTGGTGGTGCAGGCCTTGACATGTATCTGCCAAATTATAAATTGGGAAAAACACTTGGCATTGGGTCCTTTGGCAAGGTGAAAATTGCGGAACATGTATTGACTGGTCATAAGGTTGCAATCAAGATTCTTAACCGTCGCAAGATAAAGAACATGGACATGGAAGAAAAAGTAAGAAGAGAAATCAAAATTCTCAGACTGTTCATGCACCCGCACATTATAAGACTTTATGAGGTTATCGAAACTCCAACTGACATTTATGTTGTCATGGAGTATGTGAAATCTGGAGAGCTTTTTGATTACATAGTAGAAAAGGGCAGGTTGCAAGAAGATGAAGCTCGTAATTTTTTTCAGCAGATAATCTCTGGTGTGGAGTACTGTCACAGGAATATGGTGGTTCATAGGGATCTGAAGCCTGAGAATTTACTTTTGGACTCCAAATGTAATGTAAAGATTGCTGATTTTGGCTTGAGCAACATCATGCGTGATGGTCACTTTCTTAAGACAAGTTGTGGAAGCCCCAACTATGCTGCTCCTGAGGTTATCTCTGGGAAATTGTATGCTGGACCTGAAGTAGATGTGTGGAGCTGTGGTGTAATTTTATATGCCCTTCTTTGTGGCACCCTTCCTTTTGACGATGAAAACATTCCAAATCTCTTCAAGAAAATAAAGGGAGGAATATACACTCTTCCTAGTCATCTATCACCTGGTGCTAGAGATTTGATACCAAGAATGCTTGTGGTCGACCCTATGAAGAGGATGACCATACCTGAGATCCGTCAACATGCATGGTTCCAAGCACGTCTTCCGCGTTATTTAGCTGTTCCACCACCAGATACAATGCTACAGGCAAAAAAGATTGATGAGGAGATCCTTCAGGAAGTGGTGAATATGGGATTTGACCGGAATCAATTGATTGAATCTCTTCGCTTGTGCCCTTCATTTTTTCCTTGTATGTCTGCCAGATTATCTCTGACTACCATCCATATATTTCAGGGTACCTTGGCATACTATTTGTTATTGGACAGCAGATTCCGTGTTTCCAGTGGCTATCTTGGAGCTCAGTTTCAAGAATCCATG 1101 0.4178 MDGPAGRGGGAGLDMYLPNYKLGKTLGIGSFGKVKIAEHVLTGHKVAIKILNRRKIKNMDMEEKVRREIKILRLFMHPHIIRLYEVIETPTDIYVVMEYVKSGELFDYIVEKGRLQEDEARNFFQQIISGVEYCHRNMVVHRDLKPENLLLDSKCNVKIADFGLSNIMRDGHFLKTSCGSPNYAAPEVISGKLYAGPEVDVWSCGVILYALLCGTLPFDDENIPNLFKKIKGGIYTLPSHLSPGARDLIPRMLVVDPMKRMTIPEIRQHAWFQARLPRYLAVPPPDTMLQAKKIDEEILQEVVNMGFDRNQLIESLRLCPSFFPCMSARLSLTTIHIFQGTLAYYLLLDSRFRVSSGYLGAQFQESM 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi303g00047 367 CDD UBA_SnRK1_plant 294 350 - -
Sebi303g00047 367 PANTHER MAP/MICROTUBULE AFFINITY-REGULATING KINASE 19 276 - -
Sebi303g00047 367 ProSitePatterns Protein kinases ATP-binding region signature. 26 49 IPR017441 GO:0005524
Sebi303g00047 367 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 293 317 IPR015940 -
Sebi303g00047 367 FunFam Non-specific serine/threonine protein kinase 11 366 - -
Sebi303g00047 367 ProSiteProfiles Protein kinase domain profile. 20 272 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi303g00047 367 Pfam Protein kinase domain 20 272 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi303g00047 367 ProSitePatterns Serine/Threonine protein kinases active-site signature. 139 151 IPR008271 GO:0004672|GO:0006468
Sebi303g00047 367 Pfam UBA/TS-N domain 294 319 IPR015940 -
Sebi303g00047 367 FunFam Non-specific serine/threonine protein kinase 13 99 - -
Sebi303g00047 367 CDD STKc_AMPK_alpha 17 272 - -
Sebi303g00047 367 SUPERFAMILY Protein kinase-like (PK-like) 17 295 IPR011009 -
Sebi303g00047 367 SMART serkin_6 20 272 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi303g00047 367 Gene3D Transferase(Phosphotransferase) domain 1 12 331 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi303g00047 Sebi-Chr303 717111 766149 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi303g00047 20 272 CBL-interacting serine-threonine protein kinases AT4G24400 52.756 3.22e-95 288
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_AMPK Sebi303g00047 Pkinase 2.4e-80 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi303g00047 K07198 - gmx:100796687 648.662