Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi303g00035 ATGGAAGATCAACAGTTGAAACTGCCACCTACCTATAGATTTCATCTGACAGATGAAGAGCTCATAAATGATTACCTCGTTAAAAAGGTTGTTGACAACTCCTTATGTGTTATAGCAATTGCTGAAGTTGATTTGAACAAGTGTGAGCCATGGGATTTTCCTGATGAGTGTTTATAG 177 0.3729 MEDQQLKLPPTYRFHLTDEELINDYLVKKVVDNSLCVIAIAEVDLNKCEPWDFPDECL 58
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi303g00035 58 ProSiteProfiles NAC domain profile. 8 58 IPR003441 GO:0003677|GO:0006355
Sebi303g00035 58 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 5 55 - -
Sebi303g00035 58 SUPERFAMILY NAC domain 5 56 IPR036093 GO:0003677|GO:0006355
Sebi303g00035 58 Gene3D NAC domain 17 58 IPR036093 GO:0003677|GO:0006355
Sebi303g00035 58 Pfam No apical meristem (NAM) protein 9 56 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi303g00035 Sebi-Chr303 464326 464502 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi303g00035 8 54 NAC Transcription Factor Family AT5G53950 65.957 4.90e-18 73.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Sebi303g00035 NAM 9e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi303g00035 - - gmx:100782172 84.3445