LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Sebi303g00034	ATGGAAGATCAACAGTTGAAACTGCCACCTACCTATAGATTTCATCTAACAGATGAAGAGCTCATAAATGATTACCTCGTTAAAAAGGTTGTTGACAACTCCTTCTGTGTTATAGCAATTGCTGAAGTTGATTTGAACAAGTGTGAGCCATGGGATTTTCCTGGGTTTGCTAATATGGGTGAAATAATATGGCAAAGACAGGGAGATATCCGCGGCAAATGCATTGATTGGGGTGAAGAAAACTATAGTTTTCTCCAAAGGAAGAGCTCCAAAAGGTTCAACACCTTCAGAGAGGAACCATCACCTCCTTCTCAATTGCTTCCATTGGCGGATTTTTCTCCATACAACAACATAACAAGAACGACTGCAGGTGATTTATCTCAATTGATCAACTTCTCCTATCCAAATCAAATGGAGGATCAGAGAGCACAAGATGACATTGTTGATTTCATGGAAGCTCCCATCTTAGCCTTTCAATCTTTAGGACCCTATGATATTTCCCCTTATGCTAAACAGACCCCTGCATTCTCCAACCATTCCATAATGATTGCACAACAAATTGGCCAACCACAGTATCCTGATTATTCTCTGCCTCAAGAACAACCAAAGTTAAGGATTCTAATCGAATATCCTGGATCGAGTTTACAACACATTCAAAAGATAGATTTTTCTCTCGGAACATAA	684	0.3947	MEDQQLKLPPTYRFHLTDEELINDYLVKKVVDNSFCVIAIAEVDLNKCEPWDFPGFANMGEIIWQRQGDIRGKCIDWGEENYSFLQRKSSKRFNTFREEPSPPSQLLPLADFSPYNNITRTTAGDLSQLINFSYPNQMEDQRAQDDIVDFMEAPILAFQSLGPYDISPYAKQTPAFSNHSIMIAQQIGQPQYPDYSLPQEQPKLRILIEYPGSSLQHIQKIDFSLGT	227

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Sebi303g00034	227	SUPERFAMILY	NAC domain	5	64	IPR036093	GO:0003677\|GO:0006355
	Sebi303g00034	227	Pfam	No apical meristem (NAM) protein	9	88	IPR003441	GO:0003677\|GO:0006355
	Sebi303g00034	227	PANTHER	PROTEIN CUP-SHAPED COTYLEDON 2-RELATED	5	64	-	-
	Sebi303g00034	227	Gene3D	NAC domain	17	100	IPR036093	GO:0003677\|GO:0006355

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Sebi303g00034	Sebi-Chr303	462169	463296	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Sebi303g00034	8	64	NAC Transcription Factor Family	AT5G53950	66.667	5.03e-20	85.5

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	NAC	Sebi303g00034		NAM	5.9e-11	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Sebi303g00034	-		-	gmx:100782172	99.3673