Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi303g00030 ATGGGATCAGTGGAGAATGTATCTAGACCAAGAATGGAAGATCAACAGTTGAAACTGCCACCTGGATTTAGATTTCATCCAACAGATGAAGAACTCATAAATGATTACCTCGTTAAAAAGGTTGTTGACAACTCCTTCTGTGCTATAGCAATTGCTGAAGTTAATTTGAACAAGTGTGAGCCATGGGATTTGCCTGGTTTTGCTAATATGGGTGAAACAGAATGGTACTTTTTTAATGTGAGGGATAGAAAATACCCGACTGGTTTAAGGACAAATAGAGCCACTGATGCTGGCTACTGGAAGGCCACAGGCAAAGATAGGGAGATATTCGCGACAAATGCATTGATTGGGGTGAAGAAAACACTAGTTTTCTACAAAGGAAGAGCTCCAAAAGGTGGAAAAACCAACTGGATAATGCATGAATATAGATTGGAGGGTAAAAATTCTGAATATAATCTCGCTAGGCTTGGAAAGAAAATGCATGTTCCAAACTTTGGAAGGTTCAACACCTTTGGAGAGGAACCATCACCTCCTTCTCAATTGCTTCCATTGACGGATTTTCCTCCACACAACAACATAACAAGAACAACTGCAGGTGATTTGTCTCAATTGATCAACTTCTCCAATCCAAATCAAATGGAGGATCATAGAGCAAAAGATGACATTGTTGATAGCATGGAAGCTCCTATCTTAGCCATTCAATCTTCAGGACCCTACGATATTTCTGCTTACGCTAAACCAAACCCTGCATTCTCCAACCATTCCACAATGATTGCACAACAAATTGGCCAACCAAAGTATCCTGCTTATTCTCTGCCTCAAGAACAACCAAAGTTAAGGATGCTAGCGGGAAATCCTGGATCGAGTTTACAACACATTCAAAAAATAGATTTTTCTCTCGGAACAGACTTTAATGCTGATATCTCCCCTGTAACAACCAACAGTGACACTTTTCAAAGGTGGTTTGGGAATCAAGAACATGCATCAGCTTCTACATGGTCGGTGGATATTGATTACTTGTGGAATTACTAA 1032 0.4002 MGSVENVSRPRMEDQQLKLPPGFRFHPTDEELINDYLVKKVVDNSFCAIAIAEVNLNKCEPWDLPGFANMGETEWYFFNVRDRKYPTGLRTNRATDAGYWKATGKDREIFATNALIGVKKTLVFYKGRAPKGGKTNWIMHEYRLEGKNSEYNLARLGKKMHVPNFGRFNTFGEEPSPPSQLLPLTDFPPHNNITRTTAGDLSQLINFSNPNQMEDHRAKDDIVDSMEAPILAIQSSGPYDISAYAKPNPAFSNHSTMIAQQIGQPKYPAYSLPQEQPKLRMLAGNPGSSLQHIQKIDFSLGTDFNADISPVTTNSDTFQRWFGNQEHASASTWSVDIDYLWNY 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi303g00030 343 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 16 247 - -
Sebi303g00030 343 SUPERFAMILY NAC domain 15 149 IPR036093 GO:0003677|GO:0006355
Sebi303g00030 343 Gene3D NAC domain 28 162 IPR036093 GO:0003677|GO:0006355
Sebi303g00030 343 FunFam NAC domain-containing protein 100-like 28 164 - -
Sebi303g00030 343 Pfam No apical meristem (NAM) protein 20 144 IPR003441 GO:0003677|GO:0006355
Sebi303g00030 343 ProSiteProfiles NAC domain profile. 19 159 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi303g00030 Sebi-Chr303 435131 436409 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi303g00030 17 343 NAC Transcription Factor Family AT5G07680 44.380 7.90e-78 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Sebi303g00030 NAM 4.9e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi303g00030 - - gmx:100782172 418.313