Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi303g00025 ATGGATCTTCTTGGATTTCTTCTTCTGGGATTTTTCTCCTTGGTGTCACATGTAAAAGGGTATGGTGGGGGTTGGATCAATGCTCATGCCACTTTCTATGGTGGAAGTGATGCTTCTGGGACAATGGGTGGGGCTTGTGGGTATGGAAACCTATATAGCCAAGGTTATGGAACTAATACAGCAGCACTGAGCACTGCCCTGTTCAACAATGGCTTAAGCTGTGGTGCATGTTTTGAAATTAAATGTGTGAATGACCCACAATGGTGTCTTCCTGGCTCTATTGTAGTTACTGCCACTAATTTTTGCCCACCTGGTGGTTGGTGTGACCCTCCCTATCACCATTTTGATCTTTCACAACCTATTTTCCAGCACATTGCTCAATATAAGGCTGGGATTGTACCTGTAGCATACAGAAGGGTGAGGTGCAGGAGAAAAGATGGAATCAGGTTCACCATCAATGGCCATTCTTACTTCAATTTAGTCCTTGTTACTAATGTTGGAGGTGCTGGTGATGTGCATGCTGTGTCCATCAAAGGTTCAAGGACTAGATGGCAAGCCATGTCAAGGAACTGGGGGCAAAATTGGCAGAGCAATTCCTACCTAAATGGACAGAGTCTTTCCTTTGTAGTCACCACCAGTAATGGCCACAGTGTGGTCTCATACAATGCTGCCCCAGCTAGTTGGTCCTTTGGCCAGACATACACTGGGAGGCAGTTCAACTACTAA 726 0.4559 MDLLGFLLLGFFSLVSHVKGYGGGWINAHATFYGGSDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGACFEIKCVNDPQWCLPGSIVVTATNFCPPGGWCDPPYHHFDLSQPIFQHIAQYKAGIVPVAYRRVRCRRKDGIRFTINGHSYFNLVLVTNVGGAGDVHAVSIKGSRTRWQAMSRNWGQNWQSNSYLNGQSLSFVVTTSNGHSVVSYNAAPASWSFGQTYTGRQFNY 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi303g00025 241 SUPERFAMILY Barwin-like endoglucanases 9 165 IPR036908 -
Sebi303g00025 241 FunFam Expansin 147 239 - -
Sebi303g00025 241 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 43 147 IPR007112 -
Sebi303g00025 241 Gene3D - 13 143 IPR036908 -
Sebi303g00025 241 Gene3D - 147 239 IPR036749 -
Sebi303g00025 241 SUPERFAMILY PHL pollen allergen 145 236 IPR036749 -
Sebi303g00025 241 SMART dpbb_1 60 137 IPR007112 -
Sebi303g00025 241 Pfam Expansin C-terminal domain 148 225 IPR007117 -
Sebi303g00025 241 PANTHER EXPANSIN-A15 10 239 IPR002963 GO:0009664
Sebi303g00025 241 Pfam Lytic transglycolase 60 137 IPR009009 -
Sebi303g00025 241 FunFam Expansin 15 143 - -
Sebi303g00025 241 CDD DPBB_EXPA_N 24 142 - -
Sebi303g00025 241 PRINTS Expansin/Lol pI family signature 222 236 IPR007118 GO:0005576
Sebi303g00025 241 PRINTS Expansin/Lol pI family signature 42 60 IPR007118 GO:0005576
Sebi303g00025 241 PRINTS Expansin/Lol pI family signature 130 146 IPR007118 GO:0005576
Sebi303g00025 241 PRINTS Expansin/Lol pI family signature 184 198 IPR007118 GO:0005576
Sebi303g00025 241 PRINTS Expansin/Lol pI family signature 24 39 IPR007118 GO:0005576
Sebi303g00025 241 PRINTS Expansin/Lol pI family signature 64 82 IPR007118 GO:0005576
Sebi303g00025 241 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 157 236 IPR007117 -
Sebi303g00025 241 PRINTS Expansin signature 193 214 IPR002963 GO:0009664
Sebi303g00025 241 PRINTS Expansin signature 55 69 IPR002963 GO:0009664
Sebi303g00025 241 PRINTS Expansin signature 82 93 IPR002963 GO:0009664
Sebi303g00025 241 PRINTS Expansin signature 146 158 IPR002963 GO:0009664
Sebi303g00025 241 PRINTS Expansin signature 158 179 IPR002963 GO:0009664
Sebi303g00025 241 PRINTS Expansin signature 94 104 IPR002963 GO:0009664
Sebi303g00025 241 PRINTS Expansin signature 105 122 IPR002963 GO:0009664
Sebi303g00025 241 PRINTS Expansin signature 122 135 IPR002963 GO:0009664
Sebi303g00025 241 PRINTS Expansin signature 222 238 IPR002963 GO:0009664
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi303g00025 Sebi-Chr303 352638 354119 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi303g00025 1 239 Expansin Gene Family AT2G03090 78.543 4.62e-144 401
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi303g00025 K20628 - gmx:100791784 472.626