Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi303g00014 ATGATTCAATCTCCGTCTGCTACACCATCACAGCTTCAATTGGATTTAGAAGCTAATGCTTTACTCAACAGTCGATGGTGGGATTCTGACTTCAATATCTCAGATCGCTGTCAGTGGGGTGGTATAGCTTGCAACAAAGCAGGAAGCATAACAGAAATCCACTATGGGAAATATTATAATAATTATAAAGAAGGGATTCAATTTGCAACACTCAATCTCTCTGCTTTCCACAACTTAGAAAAGCTTGTTGTCATTGGAACAGAACAAGGAGGGACCATCCCACCAGAAATAGGTACTCTCACTAAACTCACTTATCTCGATCTTTGCTACAATTCTTTTGAAGGTCCCATCCCAAATGGTATCAATCCTTATGCTCTAATAGGCAACAAGGAAGTATGCAGCAACATTTCGTATCTCCAATTCCAACCTTGTTCATCTCAACACAAAGTAGTGCACAAGCTAGTCATACTTCTTCCTATCCTCATTTTTCTAGTCTTGACCTTCGCACTACTTTTGTGTCTAAAGCTTCGTCTTGTTGCAACCAAGAAAAAACATGAAAACACAGTGATAACTAAGAATGGGGATTTGTTCTGCATATGGAACTATGATGGAAATATTGCATATGAAGACATCATTACAGCAACTGAGGACTTTGACTTGAAATACTGCATTGGAACAGGAGCATATGGGAGTGTTTACAAGGCACAATTACATGGTGGTAAGGTTGTTGCCTTGAAGAAACTCCACAGATTTGAAGCAGAGGTGGAGACTTTTGATAAGAGTTTTAGAAATGAAGTTAAGGTATTATCAAAAATAAAGCATCGACACATTGTCAAGCTTTATGGATTCTGCTTGCATAATAGAATCATGTTTTTGATCTATCAATACATGGAGAAAGGAAGCTTGTTCTCTGTCTTGTATGATGATGCAGAAGCAATGGAATTGGATTGGAGAAAGAGGGTTGACATTGTCAAAGGCATTGCACATGCTCTGTCATATCTTCATCATGACTGCAACCCTCCAATAGTGCATAGAGACATAGCTACCACAAATATCTTACTTAACTCTGAGTGGGAGCCAAGTGTTTCTGACTTTGGCACAGCTAGACTCCTCCAACATGATTCATCCAATCAAACTATAGCCGCTGGAACCATTGGATATATAGCTCCAGAGCTTGCCTACACAATGGTTGTGAGTGAAAAGTGTGATGTCTATAGCTTTGGAGTAGTGGCACTTGAAACTTTAGTGGGAAAGCATCCTAAGGAAATATTGTCATCACTTCAATCAACATCAAATCATGACATAGCACTATGTGAAGTACTGGACCAACGCCTCCCACTGCCAAATATCAACTCATGA 1359 0.3944 MIQSPSATPSQLQLDLEANALLNSRWWDSDFNISDRCQWGGIACNKAGSITEIHYGKYYNNYKEGIQFATLNLSAFHNLEKLVVIGTEQGGTIPPEIGTLTKLTYLDLCYNSFEGPIPNGINPYALIGNKEVCSNISYLQFQPCSSQHKVVHKLVILLPILIFLVLTFALLLCLKLRLVATKKKHENTVITKNGDLFCIWNYDGNIAYEDIITATEDFDLKYCIGTGAYGSVYKAQLHGGKVVALKKLHRFEAEVETFDKSFRNEVKVLSKIKHRHIVKLYGFCLHNRIMFLIYQYMEKGSLFSVLYDDAEAMELDWRKRVDIVKGIAHALSYLHHDCNPPIVHRDIATTNILLNSEWEPSVSDFGTARLLQHDSSNQTIAAGTIGYIAPELAYTMVVSEKCDVYSFGVVALETLVGKHPKEILSSLQSTSNHDIALCEVLDQRLPLPNINS 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi303g00014 452 Pfam Protein kinase domain 223 422 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi303g00014 452 Gene3D Ribonuclease Inhibitor 10 155 IPR032675 -
Sebi303g00014 452 Gene3D Phosphorylase Kinase; domain 1 178 296 - -
Sebi303g00014 452 Gene3D Transferase(Phosphotransferase) domain 1 297 450 - -
Sebi303g00014 452 ProSitePatterns Tyrosine protein kinases specific active-site signature. 342 354 IPR008266 GO:0004672|GO:0006468
Sebi303g00014 452 PANTHER LEUCINE RICH REPEAT KINASE 2 72 449 - -
Sebi303g00014 452 SMART tyrkin_6 218 445 IPR020635 GO:0004713|GO:0006468
Sebi303g00014 452 SUPERFAMILY L domain-like 33 173 - -
Sebi303g00014 452 FunFam Leucine-rich repeat receptor protein kinase MSP1 180 296 - -
Sebi303g00014 452 ProSitePatterns Protein kinases ATP-binding region signature. 224 246 IPR017441 GO:0005524
Sebi303g00014 452 FunFam Os07g0541700 protein 297 386 - -
Sebi303g00014 452 ProSiteProfiles Protein kinase domain profile. 218 452 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi303g00014 452 SUPERFAMILY Protein kinase-like (PK-like) 204 428 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi303g00014 Sebi-Chr303 212789 215717 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi303g00014 75 390 Receptor kinase-like Gene Family AT4G08850 43.824 4.25e-85 279
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Sebi303g00014 Pkinase 3.2e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi303g00014 - - aprc:113862530 511.146