Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi303g00007 ATGGTTCTGCTTTCATTACTGAACACACGGTCCCTCTCCAACAAGCACCAATGTCTCTATCTCCTAAACTCGTGTTGTTCTATCGACCAACTCCATCAAATCCAAGCACAAATCCACCTCCATGGCCTTTACCACGACACTTACTTGCTCTCAGAACTCGTTTATTTTTCCTCCCTCTCTCCCTTCAAGAACCTTAGCCACGCGCGGAAACTCGTTCTTCACTCCGCCAACCCATCACCCATTTCCTGGAACATTCTCATCAGGGGTTACGCCTCAAGCGATTCTCCCATCGAAGCCATCTGGGTATTCCGGAAAATGCGAGAACGAGGAGCCAAACCCAACAAGCTCACGTTCCCCTTTCTCTTCAAGTGTTGTGCTGGGGCTTCGGCACTCGTTGAAGGCAAGCAGGTGCACGCGGATTCTGTGAAGTTTGGTTTGGACTCTGATGTCTACGTTGCTGCTGCAGTGAGAATAAGCGTCAACAACGAGCATCTAACTCTCAGTCACAAACTTTATCAATCTGCGTCTGCTGCAGTACCATCACAGCTTCAATTGGATTTGGAAGCTAAAGCCATAATCAACAGTGGATGGTGGAACACTTCCCATCCATACTACAATGTCTCCCGTCGCTGTGAACAGTGGAATTATATAGTTTGCAACAAGGCAGGAAGCATAACAGGAATCTACTACTTTGGGCCATATTCTGAAGCAGCGGTTCAATTTGCAACACTCAACCTCTCTGCTTTCCAGAACTTAGAAAAGCTTGTTGTCTGGAGAAAACTAAAAGGGGCCATTCCACCAGAAATAGGTATTCTCACCAAACTCACTTATCTCGATTTGTCCCACAATTCTCTTGAAGGGGAGATACCCCCTTCAATAGGAAATCTTAGCCTATTGCAGAGCCTTTACATCTCTAATAACAACATTCAAGGCCCCATTCCTCATGAGTTGGGCTTCCTCAAAAGTCTTGGGGCAATATATCTATCTCATAACAGAATCAATGGGACCTTACCCATTTCACTTACAAATCTCACCCAGTTACAAGAGCTTGACATTTCCAACAATTTTCTTGTTGGTTCCCTCCCTTCTAATTTAGATCAATTATCCAACTTGCAAGAGTTATGGCTAGGTAACAACTCCATCATTGGGACTATCCCACCAGAAATTGGTACTCTCACCAAACTCTCTTATCTCCATTTGTCCACCAATTTTCTTGAAGGTGAGATACCCCCATCAATAGGAAATCTTAGCCTATTACAGAGCCTATACATCTCTAACAACCACATTCAAGGCTCTATTCCTCATGAGTTGGGCTGCCTAACAAATCTTACTTCATTAGATCTGTCTAACAACTACATCCAAGGCTTCATTCCTCATGAGTTGGGCTTCATGAAAAGTCTAAAGATATTAGATCTATCTCATAACAGAATCAATGGGACCTTGCCAATTTCACTTACAAATTTCACCAAATTAGAAAAGCTTGACATTTCCAACAATCATCTTGTTGGTTCCCTCCCTTTTAATTTAGATCAATTATCCAACTTGCAAGAGTTGCGGCTAAGTAACAACTCCATCAATGGGACCTTGCCTATTTCGCTTACAAATCTCACCAAATTAGAAAAACTTGACATTTCAAACAATCTTCTCCTTGGTTCCCTTCCTTCTAATTTAGGTCAATTAACCCACTTATACTTTTTGGATCTAAGCTACAATAATCTCACCGGAACGGTTCCCCTATTTCTCCTTAATGTTCCTCAAATGAACATTTCCTACAATTGTTTGAAAGGTCCCATTCCAAATGGAGTCATTCCTAATGCTTTAATCGGCAACAAGGATCTTCATCACATTGCAACTAAAGACAAACATGCAAGTACAATGGCAACTAAGAATGGGGATATATTCTCTATATGGAACTATGATGGAAACATAGTGTATGAAGACATCATTAGAGCAACAGAAGATTTTGACATGAAATATTGCATTGGGACAGGAGCGTATGGGAGTGTTTACAAGGCTCAATTACCACATGGCAAGGTTGTTGCCTTGAAGAAACTCCATGGTTTCGAAGCAGAGGTGCCAGCTTTGGATGAGAGTTTTAGGAATGAAGTGAGGGTATTATCAGAAATAAAACATCGACACATTGTGAAGCTTTATGGATTCTGCTTGCACAAAAGAATCATGTTTTTGATCTATCAATACATGGAGAAAGGAAGCTTGTTCTCTGTCTTGTATGATGATGAAGAAGCAATGGAATTGGATTGGAGAAAGAGGGTTAACATTGTTAAAGGCATTGCACATGCTTTGTCATATCTTCATCATGATTGCAACCCTCCAATAGTACATAGAGACATAGCTACGAGTAATATCTTACTTAACTCTGAGTGGGAGCCAAGTGTTTCTGACTTTGGCACAGCCAGACTCCTCCAACATGATTCATCAAATCAAACTATAGTTGCTGGAACCATTGGATATATAGCTCCAGAGCTTGCCTACACAATGGTTGTGAGTGAAAAAAGTGATGTCTATAGCTTTGGAGTAGTGGCACTTGAAACTTTAGTGGGGAAGCATCCTAAGGAAATATTGTCATCACTTGAATCAAGATCAACTCATAACATAGCACTATGTGAAGTATTGGACCAACGCCTCCCACTACCAAATATCAACTCATGA 2670 0.4139 MVLLSLLNTRSLSNKHQCLYLLNSCCSIDQLHQIQAQIHLHGLYHDTYLLSELVYFSSLSPFKNLSHARKLVLHSANPSPISWNILIRGYASSDSPIEAIWVFRKMRERGAKPNKLTFPFLFKCCAGASALVEGKQVHADSVKFGLDSDVYVAAAVRISVNNEHLTLSHKLYQSASAAVPSQLQLDLEAKAIINSGWWNTSHPYYNVSRRCEQWNYIVCNKAGSITGIYYFGPYSEAAVQFATLNLSAFQNLEKLVVWRKLKGAIPPEIGILTKLTYLDLSHNSLEGEIPPSIGNLSLLQSLYISNNNIQGPIPHELGFLKSLGAIYLSHNRINGTLPISLTNLTQLQELDISNNFLVGSLPSNLDQLSNLQELWLGNNSIIGTIPPEIGTLTKLSYLHLSTNFLEGEIPPSIGNLSLLQSLYISNNHIQGSIPHELGCLTNLTSLDLSNNYIQGFIPHELGFMKSLKILDLSHNRINGTLPISLTNFTKLEKLDISNNHLVGSLPFNLDQLSNLQELRLSNNSINGTLPISLTNLTKLEKLDISNNLLLGSLPSNLGQLTHLYFLDLSYNNLTGTVPLFLLNVPQMNISYNCLKGPIPNGVIPNALIGNKDLHHIATKDKHASTMATKNGDIFSIWNYDGNIVYEDIIRATEDFDMKYCIGTGAYGSVYKAQLPHGKVVALKKLHGFEAEVPALDESFRNEVRVLSEIKHRHIVKLYGFCLHKRIMFLIYQYMEKGSLFSVLYDDEEAMELDWRKRVNIVKGIAHALSYLHHDCNPPIVHRDIATSNILLNSEWEPSVSDFGTARLLQHDSSNQTIVAGTIGYIAPELAYTMVVSEKSDVYSFGVVALETLVGKHPKEILSSLESRSTHNIALCEVLDQRLPLPNINS 889
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi303g00007 889 Gene3D Tetratricopeptide repeat domain 16 221 IPR011990 GO:0005515
Sebi303g00007 889 Gene3D Ribonuclease Inhibitor 240 408 IPR032675 -
Sebi303g00007 889 FunFam Nuclear pore complex protein NUP107 174 339 - -
Sebi303g00007 889 Pfam PPR repeat family 80 126 IPR002885 -
Sebi303g00007 889 ProSiteProfiles Leucine-rich repeat profile. 274 296 IPR001611 GO:0005515
Sebi303g00007 889 Gene3D Transferase(Phosphotransferase) domain 1 734 887 - -
Sebi303g00007 889 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 79 113 IPR002885 -
Sebi303g00007 889 FunFam Os07g0541700 protein 734 821 - -
Sebi303g00007 889 SMART LRR_sd22_2 464 487 - -
Sebi303g00007 889 SMART LRR_sd22_2 320 343 - -
Sebi303g00007 889 SMART LRR_sd22_2 536 559 - -
Sebi303g00007 889 SMART LRR_sd22_2 488 517 - -
Sebi303g00007 889 SMART LRR_sd22_2 368 400 - -
Sebi303g00007 889 SMART LRR_sd22_2 344 367 - -
Sebi303g00007 889 SMART LRR_sd22_2 440 461 - -
Sebi303g00007 889 SMART LRR_sd22_2 272 298 - -
Sebi303g00007 889 FunFam Leucine-rich repeat receptor protein kinase MSP1 618 733 - -
Sebi303g00007 889 Pfam Leucine Rich Repeat 346 365 IPR001611 GO:0005515
Sebi303g00007 889 SUPERFAMILY RNI-like 260 591 - -
Sebi303g00007 889 NCBIfam pentatricopeptide repeat 81 114 IPR002885 -
Sebi303g00007 889 ProSitePatterns Protein kinases ATP-binding region signature. 661 683 IPR017441 GO:0005524
Sebi303g00007 889 ProSiteProfiles Protein kinase domain profile. 655 889 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi303g00007 889 ProSitePatterns Tyrosine protein kinases specific active-site signature. 779 791 IPR008266 GO:0004672|GO:0006468
Sebi303g00007 889 Pfam Protein kinase domain 660 859 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi303g00007 889 SMART tyrkin_6 655 878 IPR020635 GO:0004713|GO:0006468
Sebi303g00007 889 Gene3D Ribonuclease Inhibitor 409 505 IPR032675 -
Sebi303g00007 889 Gene3D Ribonuclease Inhibitor 506 618 IPR032675 -
Sebi303g00007 889 FunFam Leucine-rich repeat receptor-like protein kinase TDR 354 615 - -
Sebi303g00007 889 PRINTS Leucine-rich repeat signature 464 477 - -
Sebi303g00007 889 PRINTS Leucine-rich repeat signature 275 288 - -
Sebi303g00007 889 Gene3D Phosphorylase Kinase; domain 1 619 733 - -
Sebi303g00007 889 SUPERFAMILY Protein kinase-like (PK-like) 638 865 IPR011009 -
Sebi303g00007 889 SMART LRR_typ_2 416 439 IPR003591 -
Sebi303g00007 889 SMART LRR_typ_2 464 488 IPR003591 -
Sebi303g00007 889 SMART LRR_typ_2 440 463 IPR003591 -
Sebi303g00007 889 SMART LRR_typ_2 368 392 IPR003591 -
Sebi303g00007 889 SMART LRR_typ_2 344 367 IPR003591 -
Sebi303g00007 889 SMART LRR_typ_2 536 560 IPR003591 -
Sebi303g00007 889 SMART LRR_typ_2 512 535 IPR003591 -
Sebi303g00007 889 SMART LRR_typ_2 272 296 IPR003591 -
Sebi303g00007 889 Pfam Leucine rich repeat 441 501 IPR001611 GO:0005515
Sebi303g00007 889 Pfam Leucine rich repeat 274 333 IPR001611 GO:0005515
Sebi303g00007 889 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 395 884 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi303g00007 Sebi-Chr303 106968 112568 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi303g00007 247 827 Receptor kinase-like Gene Family AT4G08850 37.403 3.19e-131 417
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Sebi303g00007 Pkinase 7.2e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi303g00007 - - cave:132185120 654.825