Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi302g00043 ATGAACAACAACCCTGGAAGGCCCATTCCTCCTTCTAAGGTCAAATCCTTTAAGGATAAAACCCAAGTGGATGCGTGGCTCTTCGGTAATCCTATGCATTGTCCAGGGGCGCTTCATTTCGCGGATAAGAATAACACCGTTATCAGCTATGGCTTACAAACAAACTCAACTGTGGTTCAAAAACGAGGCAAATATCAAGATCCTACTACTTTTCAACTCCCTCTTCAGCTCGCTGCAGAGCGTGAAATCGCTAGATACCTTATTGGAGACCCAAACTTCAGCTGGAATGTGTTTTTGAAGGAGTTTGCGCACCCTGCTAGGAGCCCTTTCTCTGCTGTGGGTTCAATAGGTCCAGCATTTTTCCTTGCAATTGCTATGTTTAATTTTGTTCTTCAGATGAGTTCTTTGGTGACAGAGAAAGAGCTTAAGCTTCGTCAGGCAATGAACGTGATGGGCCTTTATGACTCTGCTTACTGGTTATCCTGGCTCACTTGGGAGGCTGTTGTTACGCTCCTTTCATCCCTTCTCATAGTTCTCTTTGGAATGATGTTTCAGTTTCGTTTTTTCTTGAAAAACAATTTTGCCGTCATATTCGTTTTGTTCTTCCTATTTGAACTTAATATGACCGGCTTGGCCTTCATGTTATCTGCTTTCATTCAGAAATCTTCTTCTGCCACAACAGTGGGGTTCTCCATATTTATTGTGGGCTTTGTGACTCAGCTTGTGGTGCAAGCTGGATTTCCTTATACAGATAGCATCTCCAGTACTTTCCGAAATATCTGGTCATTATTCCCTCCTAACCCTTTTGCTCAAGCTCTGAAAGTGCTTTCAGATGCAGTTGCAACATCTGAAGATGATGGTCTTAGCTGGAGTAAACGGGGAGAATGCGCTCCTAATGATGAAGACTGTGTGATAACAATTAATGATATTTATAGTTGGCTTCTGGCTACGTTCTTTATATGGTTTATTCTGGCCATATACTTCGACAATATAATCCCAAATGCATCGGGTGTAAGGAAATCCATGTTATACTTCCTAAGTCCCGGTTATTGGACGGGAAAAGGAGGACAAAAAGTGAAAGAGGGTGGGGTTTGTAGTTGCTTTGTTTCAGTCCCACATGAAGAGCATAGTACACCAGATGATGAAGATGTCCTTGAAGAAGAAAACACTGTGAAACAACAACAAACACAAGGTGTGGTTGACGCAAATGTTGCTGTTCAGATACATGGCATTGTGAAGACATATCCTGGTGCATTTAACATTGGTTGCTGCTGTAAATGTAAAAGAAGTTCTCCTTACAATGCTGTCAAGGGTTTGTGGGTAAACTTTGCAAAGGATCAGTTATTTTGTCTTTTAGGACCCAACGGAGCTGGAAAAACTACAGCTATTAATTGTATGACTGGGATAACTCCAGTAACTGATGGAGATGAGGTGAGACTCACAGATGCCGTCAAAGTAAGAGCTGGAAGTTACAGTGGAGGAATGAAACGTCGTCTTAGTGTTGCAATTGCCCTTATTGGTGACCCTAAATTGGTCATTTTGGATGAACCGACTACTGGTATGGATCCAATCACAAGGAGGCATGTGTGGGACATAATTGAAAATGCAAAAAGAGGGCGTGCCATTGTTCTTACAACACACTCTATGGAAGAAGCTGACATTCTAAGTGACCGCATAGGAATCATGGCAAAGGGAAAGCTCCGTTGCATTGGCACCTCAATCAGATTGAAGTCACGCTTTGGTACTGGTTTTATTGCTAATATAAGCTTCTATGGAAACAATAGTGAACACAGTCCTGCCAATGGAGATGCAATAATATCAGCAGAACATCGTGAGGCAGTGAAGCAATTCTTTAAGAATCGATTAGATGTAGTGCCAAAAGAGGAGAACAATAGCTTCCTAACTTTTGTGATTCCTCATGACAGAGAGTCGCTCTTGTCGAATTTTTTTTCCGAGCTCCAAGATAGAGAAGAAGAATTTGGCATATCGGACATCCAGCTTGGTCTAACAACTCTTGAAGAAGTTTTCTTGAATATTGCAAAGCAAGCAGAGCTAGAAAGTGCTGCAGCTGAAGGGAGCCTTGTGACTCTGACCCTGACATCTGGAGAGTCTGTGCAGATTCCTATAGGAGCTAGGTTTGTGGGAATTCCAGGAACAGAGTCTGCAGAATACCCCACAGGGTTTATGGTAGAAGTATACTGGGAGCAAGATGATACTGGTGCCCTATGTATTGCTGGCCACTCGCAGAAAGTTCCAATTCCTCAAAGTGTGCAGCTATCATCGTCTCCTTCTGCAAGACACCATAGAAGTTTAGGCCGTTCAGGATCGATTCATGGGGTTGTGATTGATCCTAATCAAGTTAGTTCAGTCAATTTCATACGTTAA 2385 0.4247 MNNNPGRPIPPSKVKSFKDKTQVDAWLFGNPMHCPGALHFADKNNTVISYGLQTNSTVVQKRGKYQDPTTFQLPLQLAAEREIARYLIGDPNFSWNVFLKEFAHPARSPFSAVGSIGPAFFLAIAMFNFVLQMSSLVTEKELKLRQAMNVMGLYDSAYWLSWLTWEAVVTLLSSLLIVLFGMMFQFRFFLKNNFAVIFVLFFLFELNMTGLAFMLSAFIQKSSSATTVGFSIFIVGFVTQLVVQAGFPYTDSISSTFRNIWSLFPPNPFAQALKVLSDAVATSEDDGLSWSKRGECAPNDEDCVITINDIYSWLLATFFIWFILAIYFDNIIPNASGVRKSMLYFLSPGYWTGKGGQKVKEGGVCSCFVSVPHEEHSTPDDEDVLEEENTVKQQQTQGVVDANVAVQIHGIVKTYPGAFNIGCCCKCKRSSPYNAVKGLWVNFAKDQLFCLLGPNGAGKTTAINCMTGITPVTDGDEVRLTDAVKVRAGSYSGGMKRRLSVAIALIGDPKLVILDEPTTGMDPITRRHVWDIIENAKRGRAIVLTTHSMEEADILSDRIGIMAKGKLRCIGTSIRLKSRFGTGFIANISFYGNNSEHSPANGDAIISAEHREAVKQFFKNRLDVVPKEENNSFLTFVIPHDRESLLSNFFSELQDREEEFGISDIQLGLTTLEEVFLNIAKQAELESAAAEGSLVTLTLTSGESVQIPIGARFVGIPGTESAEYPTGFMVEVYWEQDDTGALCIAGHSQKVPIPQSVQLSSSPSARHHRSLGRSGSIHGVVIDPNQVSSVNFIR 794
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi302g00043 794 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 428 584 IPR027417 -
Sebi302g00043 794 MobiDBLite consensus disorder prediction 755 769 - -
Sebi302g00043 794 Gene3D - 380 478 IPR027417 -
Sebi302g00043 794 Pfam ABC-2 family transporter protein 85 327 IPR013525 GO:0016020|GO:0140359
Sebi302g00043 794 Pfam AAA domain, putative AbiEii toxin, Type IV TA system 482 550 IPR003959 GO:0005524|GO:0016887
Sebi302g00043 794 SMART AAA_5 445 566 IPR003593 GO:0016887
Sebi302g00043 794 ProSitePatterns ABC transporters family signature. 491 505 IPR017871 GO:0005524|GO:0016887
Sebi302g00043 794 Gene3D - 479 588 IPR027417 -
Sebi302g00043 794 PANTHER ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA 381 476 IPR026082 GO:0016020|GO:0055085|GO:0140359
Sebi302g00043 794 MobiDBLite consensus disorder prediction 755 777 - -
Sebi302g00043 794 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 406 589 IPR003439 GO:0005524
Sebi302g00043 794 CDD ABC_subfamily_A 406 577 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi302g00043 Sebi-Chr302 1121052 1126361 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi302g00043 464 588 Calmodulin-binding Proteins AT2G36910 24.800 5.33e-07 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi302g00043 - - oeu:111366945 1034.63