Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi302g00041 ATGGGAAATGGAAACACACCCAACGAACCTGCAAGTTTCTGGACTCAAGCAAACGCTCTCTTTAGGAAGAATTTAACCTTCCAGAAACGGAATGTGAAGACAAACGTTCGGCTCATCTTGTTCCCGTTCGCGCTGTGTCTGCTACTGGTTCTCATCCAAAAGCTGGTGGATATCCAATTGGACAAGGCTTCAAATAAGTGTGGCTGCGTTTGTGCTAAGAAACAAGGGGACCAGTGCCTGGAGGAGGTGTGTGGGATTCAGTATTCAGATTTTGACCAAGTTGGCACCTGTCCCCTTCCTAACCCTCTCGAATGGCCTCCTTTCTTGCAATTGCCGGCTCCACAATACCGAGCTGTCAGAACGGACTTTCTTCCCTTTTCTGATTTTCCAAATCCCTCCTGCAGAACCAATGGCTCATGTCCTGTCACCATGCTCTTCACTGGCACTAACAACTCTTTTGGACAAATTTTGTCTGGAAATATGATACCAAGTACCTTTGCTATAAATAACTCCGATATTATGGGTAGTTTGGCAACAAATGTCCTGGGGTCAGAATCAATGACAGAGAACACCAATTTTCTGGAACCTGCTTTCTTTTCGGATCTTCCCATTTATTATCTACAGAGTCAGTGCACACAGAACTCTACCTTCTCCATTCCTGTTAACGTATCGACCACTAGCAGGCAGCAAGAGGTAAGATGTGCTCAGGGTTTACAATTGTGGCGTAATAGTTCTTCTGAGGTGAACGATGAGCTATATAAAGGTTATAGAAGAGGTAACACGGAGAGACAAATCAATGAGATTTCTGCAGGTTATGATTTTCTAAATTCAAATGCGAAAATATTTAATGTATCAAATGCCTACCTCAAGTTTCTGCTGGGATCAGGTGCCAAAATGTTGTTTGAGTTTGTAAAGGAAATGCCAAAACCTGAGACCGCAATTAACTTTGATTTGGCTTCTCTTCTGGGCGGTCTCTTCTTTACATGGGTCATCCTGCAACTTTTCCCTGTTGTCCTGACATCCCTAGTTTATGAGAAGCAGCAGAAATTAAGAATCATGATGAAAATGCATGGTCTTGGGGATGGGCCATATTGGATGATTTCATATGTAATTGCATATATTGGTGTGTTTGGAACTGGGCTATTAGGTGGCTTTCTTTTCCAATTTTTTCTTCAAGATACATCATTTCCAAGAGGGTGGATCATTGTTATGGAGTTGTTTCCTGGGTTTGCTTTATACCGGGGATTATATGAATTTTCTGAATCTTCCTTCAATGGGGATGCTTTGGGGACTAATGGTATGCGATGGGGAGATCTGAGTGATAGCACAAATGGCATGAAAGAGATCTTAATTATCATGTTCGTGGAGTGGCTATTGGTTCTATTTTTCGCTTATTACATCGATCAAGTTCTGTCATCAGGAAGCGGGAAAAGTCCTCTTTTTTTCTTGAAAAGATTTCAGAAAAAGCGCAGCTCATCTTTTCGGAAGCCTAGCATCCAGAGGCAGGGATCTAAAGTTTTTGTTCAGATGGAGAAACCTGATGTTAATCAAGAGAGGGAGAAGGTGGAGCAGCTGCTATTAGAACCAACTATTAATCATGCAATTGTATGTGACGACCTGAGAAAGATCTATCCGGGGACAGATGGTAACCCAGAGAAATTTGCAGTGAGAGGGTTGTCCCTTGCCTTGCCTCAAGGGGAGTGCTTTGGTATGCTTGGTCCGAATGGTGCTGGGAAGACTTCTTTTATCAATATGATGATTGGTCTCACGAAGCCAACCTCTGGTACAGCATTTGTTCAAGGTCTTGACATAAGAACTGACATGGACGGAATATATACTAGCATGGGTGTATGCCCCCAGCATGACTTGCTGTGGGAAACTTTGACAGGAAGAGAGCACCTGCTCTTCTATGGCAGACTAAAAAATCTTAAAGGTTCAGCCTTAACACAAGCGGTGGAAGAATCTTTGAAAAGTGTAAATCTTTTTCATGGAGGAGTTGCTGATAAACAAGCTGGAAAATATAGTGGAGGAATGAAGAGGAGGCTTAGTGTTGCAATTTCATTGATTGGAGATCCTAAAGTTGTTTATATGGATGAGCCGAGTACTGGATTAGACCCTGCATCAAGAAACAACTTATGGAATGTTGTTAAGCGTGCAAAACAGGATCGTGCAATCATTCTCACCACACATTCCATGGAAGAGGCAGAAGTCCTATGTGATCGATTAGGAATATTTGTAGATGGTAGTTTGCAGTGCATAGGAAATCCAAAGGAGCTGAAAGGCAGATATGGAGGAACTTATGTGTTCACGATGACAACATCTTTGGATCATGAAAAGGATGTAGAGAACTTGGTGCAGAAGCTCTCCCCAAATGCTAACAAGATTTACCATATCTCTGGTACCCAGAAGTTTGAACTGCCAAAAGACGAGGTTAAAATAGCGAACGTATTCCGAGCTGTTGAAACTGCAAAAAGAAATTTCACAGTTTCTGCGTGGGGTTTAGCTGATACCACGTTGGAAGATGTCTTCATTAAGGTTGCACGCGGGGCTAAAGCATTTGACACCTTGTCATAA 2574 0.4242 MGNGNTPNEPASFWTQANALFRKNLTFQKRNVKTNVRLILFPFALCLLLVLIQKLVDIQLDKASNKCGCVCAKKQGDQCLEEVCGIQYSDFDQVGTCPLPNPLEWPPFLQLPAPQYRAVRTDFLPFSDFPNPSCRTNGSCPVTMLFTGTNNSFGQILSGNMIPSTFAINNSDIMGSLATNVLGSESMTENTNFLEPAFFSDLPIYYLQSQCTQNSTFSIPVNVSTTSRQQEVRCAQGLQLWRNSSSEVNDELYKGYRRGNTERQINEISAGYDFLNSNAKIFNVSNAYLKFLLGSGAKMLFEFVKEMPKPETAINFDLASLLGGLFFTWVILQLFPVVLTSLVYEKQQKLRIMMKMHGLGDGPYWMISYVIAYIGVFGTGLLGGFLFQFFLQDTSFPRGWIIVMELFPGFALYRGLYEFSESSFNGDALGTNGMRWGDLSDSTNGMKEILIIMFVEWLLVLFFAYYIDQVLSSGSGKSPLFFLKRFQKKRSSSFRKPSIQRQGSKVFVQMEKPDVNQEREKVEQLLLEPTINHAIVCDDLRKIYPGTDGNPEKFAVRGLSLALPQGECFGMLGPNGAGKTSFINMMIGLTKPTSGTAFVQGLDIRTDMDGIYTSMGVCPQHDLLWETLTGREHLLFYGRLKNLKGSALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGDPKVVYMDEPSTGLDPASRNNLWNVVKRAKQDRAIILTTHSMEEAEVLCDRLGIFVDGSLQCIGNPKELKGRYGGTYVFTMTTSLDHEKDVENLVQKLSPNANKIYHISGTQKFELPKDEVKIANVFRAVETAKRNFTVSAWGLADTTLEDVFIKVARGAKAFDTLS 857
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi302g00041 857 CDD ABC_subfamily_A 539 760 - -
Sebi302g00041 857 FunFam ABC transporter A family member 7 524 800 - -
Sebi302g00041 857 PANTHER ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA 372 484 IPR026082 GO:0016020|GO:0055085|GO:0140359
Sebi302g00041 857 Gene3D - 527 800 IPR027417 -
Sebi302g00041 857 ProSitePatterns ABC transporters family signature. 674 688 IPR017871 GO:0005524|GO:0016887
Sebi302g00041 857 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 535 772 IPR003439 GO:0005524
Sebi302g00041 857 SMART AAA_5 565 748 IPR003593 GO:0016887
Sebi302g00041 857 Pfam ABC transporter 557 701 IPR003439 GO:0005524
Sebi302g00041 857 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 534 763 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi302g00041 Sebi-Chr302 1082142 1090279 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi302g00041 544 783 Calmodulin-binding Proteins AT2G36910 23.715 2.77e-12 68.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi302g00041 - - cave:132173778 1284.24