Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi302g00001 ATGGAAAACGTTTCAGTTTTTTGTAAGGAAGAGGATCAGATGGTTTTGCCACCTGGTTTTCGGTTTCATCCAAGTGATGAAGAGCTTATTAGTCATTACCTTTACAAAAGGGTAACTGACACCAATTTCTCTGCTAGAGCCATTGGAGAGGTGGACTTAAACAAATCTGAGCCTTGGGATTTGCCATGGAAAGCCAAAATGGGAGAAAAAGAGTGGTACTTTTTCTGTGTGAGAGACAGAAAATACCCAACTGGTTTGAGGACTAACAGAGCTACTGGAGAAGGATACTGGAAGGCCACAGGGAAAGATAAGGAGATTTACAGAGGAAAATCTCTGGTTGGAATGAAGAAAACTCTTGTTTTTTACAAAGGAAGAGCACCTAAAGGAGAGAAAACCAACTGGGTCATGCATGAATACAGACTTGAGGGTAAATTCTCTGTTCACAACCTCCCTAAAACTGCAAAGAATGAGTGGGTGATTTGCAGGGTGTTTCAGAAGAGTACAGGTGGCAAGAAAGCTCATATTTCTGGGATAATGAGATTGGACTCTTTTGGAAATCAATTGGGTTCTTCTGATCTGCCACCTCTTACAGATTTCACACCTCCCATTGGCAAAACCAAAGAACAACTGAGTGTGACTGAATCTGGTTACGTGCCCTGCTTCTCCAATCCAATTGATGTTCAAAGAAACCAAGGTGGGATCTTTGATTCCTTCAGCAACTCCCTTATTGGGGTTCCTTCTACTAGTTCATTCTATCCTACTCAAGGGATTCAAGCCCCACCAAATTTGCCATTACCCAATTCTGTTTACAACACCCAAGACCAAACTATGCTCAGAGCCTTACTTGATAACCATGGATCAAACTTAAGGAATGGTTTCAATTTCAAATCACAGGGTGATATG 903 0.4153 MENVSVFCKEEDQMVLPPGFRFHPSDEELISHYLYKRVTDTNFSARAIGEVDLNKSEPWDLPWKAKMGEKEWYFFCVRDRKYPTGLRTNRATGEGYWKATGKDKEIYRGKSLVGMKKTLVFYKGRAPKGEKTNWVMHEYRLEGKFSVHNLPKTAKNEWVICRVFQKSTGGKKAHISGIMRLDSFGNQLGSSDLPPLTDFTPPIGKTKEQLSVTESGYVPCFSNPIDVQRNQGGIFDSFSNSLIGVPSTSSFYPTQGIQAPPNLPLPNSVYNTQDQTMLRALLDNHGSNLRNGFNFKSQGDM 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi302g00001 301 FunFam NAC domain-containing protein 100-like 25 170 - -
Sebi302g00001 301 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 15 202 - -
Sebi302g00001 301 Gene3D NAC domain 25 170 IPR036093 GO:0003677|GO:0006355
Sebi302g00001 301 ProSiteProfiles NAC domain profile. 16 166 IPR003441 GO:0003677|GO:0006355
Sebi302g00001 301 SUPERFAMILY NAC domain 12 166 IPR036093 GO:0003677|GO:0006355
Sebi302g00001 301 Pfam No apical meristem (NAM) protein 17 141 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi302g00001 Sebi-Chr302 9895 11047 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi302g00001 14 293 NAC Transcription Factor Family AT5G07680 63.415 1.71e-121 349
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Sebi302g00001 NAM 5.8e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi302g00001 - - qsa:O6P43_022865 484.567