Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi301g00047 ATGTCTGGGAACATCAAGGAGGGGAGAGCTTTGGCAAAAGGGTGTTTTGTTATTTTACTTCTATTGATTTTACTTCTTTGTAGCACAGAGGGGTTGAACACAGAGGGACAAATCCTCCTAGAGCTTAAGAATGGACTTCATGATGAACTTAATCTTCTGGGAAATTGGAAGTCTACTGATGAAACCCCATGTGGATGGACAGGTGTAAATTGCAGTTATGAATATAGCAGTAATTATAATCCAGTGGTGGTGTCTCTTAATCTGAGTTCTATGGGTCTTTCTGGAACTCTAAATGCTAGCATTGGGGGTCTGACCCATCTAACTTATCTCAATCTTGCTTTCAATGATCTGATTGGAAATATCCCCAAGGAGATTAGTGAATGTTTGAGTTTGGAGTATATTTACTTGAACAATAACCAATTTGAGGGACCAATTCCTTCTGAATTGAGTAAGCTGTCTGTTTTGAGAAATTTGAATATTTGCAACAATAAACTCTCTGGTGTTATTCCAGATGAGTTTGGAAACTTGTCTTCATTGGTTGAATTAGTGGCCTATAGCAACTTCCTTGTTGGCCCCCTGCCTAATTCCATTGGAAATCTTAAGAATCTTGCTTCTTTCAGAGTTGGGGCAAATAACATTACAGGTACCTTGCCAAAGGAAATTGGCAGATGTAGGAACTTGATACGTCTTGGTCTTGCTCAAAATCAGATAGGAGGGGAGATACCAAGTGAGATTGGGATGCTCAGCAGCTTAAAGGAACTGATTTTATGGGAAAACCAGTTTTCAGGACCTATTCCTAAAGAGCTTGGGAACTGTAGCAGTCTTGAGACCCTTGCTTTATATGGCAATAATCTTATTGGACCTCTTCCTCCAGAGATTGGGAACCTCAAATCATTGAAGTGGTTGTATTTTTACAGAACTAAGTTGAATGGGACCATTCCAAGGGAAATTGGAAATCTTTCTTCAGCTATACACATTGATTTCTCAGAGAACTCTTTAGTAGGTGATATCCCTTCAGAGTTCAGCAAAATAAGTGGTCTAAGTTTGCTCTTTCTCTTTGAGAACCAGCTAACTGGTGTTATACCAGATGAGTTTAGTAGCTTGAAGAACCTTACAAAGTTAGACCTGTCACTGAATCATCTTACAGGTTCAATTCCACTTGGCTTCCAATACTTGACTCAAATGTTTCAGTTGCAACTTTTTGGCAACTCCCTGAGTGGTATTATTCCTCAGGGACTTGGACTTCACAGTCCTCTTTGGGTGGTTGATTTTTCTGACAACAAATTGACAGGAAGAATACCTCCTCATCTCTGCAGAAATTCTCGCTTGATGTTGTTGAATCTGGCAGGTAATCAACTTTATGGAAATATACCCACAGGGATATTGAACTGTGAATCATTGGCACAATTGGTGTTAACTGGAAACAGGCTTACTGGTGGCTTCCCTTCAGAATTGTGTAAACTGGTGAACCTTACAGCCATTGATTTGAACGAGAACAGGTTCAGTGGTCCACTTCCTCCTGAGATTGCAAACTGCCACAAATTGCAAAGGCTTCATATTGCAAACAATTACTTCATATCCAAGTTGCCTAAGGCAATAGGAAATCTCTCTCAATTGGTGACTTTTAATGTTTCATCAAATCTATTCACTGGAAGAATCCCACCTGAAATTTTTTGGTGCCAAAGGCTCCAGAGGCTTGATCTCAGTCAGAATAGGTTTAATGGTTCCTTGCCAAGTGAGATTGGAACACTTCAGCACTTGGAGATTCTCAAGCTCTCTGACAATAAGCTGTCTGGATACATTCCTGCATCCTTAGGTAATCTGTCTCATCTGAACTGGTTGCTGATGGGTGGCAATTTATTTTCTGGTGAAATACCTTCCCATTTGGGTTCTCTTTCAAGTTTACAGATTGGAATGGATCTCAGTTACAATAATCTTTCTGGAAGAATACCATCTCAGCTTGGCAATCTCAATATGCTTGAATATCTCTTGCTCAATAACAACCATTTGGATGGTGAAATTCCCAGCACCTTTGCAGAACTTTCAAGCTTGTTGGGGTGTAATTTCTCATACAATAACCTCTCTGGACCTATACCTTCCACTAAAATTTTCCAAAGTATGGATGTGAGCAGCTTTATTGGTGGTAATAAAGGCCTTTGTGGTTCACCTCTCGGTGACTGCAACACCAATTCAGCTTCTCACTCTGATCCTTCAGGGGAAAGTGTTGAGTCTCCTCGTGCTAAAATTGTCATGATCATTGCAGCTCTTGTTGGTGGTGTTTCTCTCATTTTGATTATAGTAATTTTGTATTATATGAGACGTCCTAGGGAGTCTATTGATTCCTTTAGAGACACTGAGAGTCCTTCCCCAGATTCTGATATCTATTTCCCTCCAAAGGAAGGTTTCACATTTCAAGATCTAATTGAAGCTACAAAAAGATTTCATGAAAGTTATGTTATTGGTAGGGGAGCATGTGGAACAGTTTATAAGGCAGTGATGAAATCTGGTAAGACAATTGCTGTTAAGAAGTTAGCATCCAACAGGGAAGGGAACAACATTGAGAATAGTTTCAGGGCTGAAATATTGACTCTGGGAAGGATAAGGCATAGGAATATAGTGAAGTTGTATGGCTTTTGCTATCACCAAGGTTCCAATCTCCTTCTATATGAGTACATGGAAAGGGGTAGCTTAGGTGAACTATTGCATGGTTCTGCAATTGCTGGATCTTATGGGTATATTGCTCCTGAATATGCATATACCATGAAGGTGACAGAAAAGTGTGACATATATAGTTATGGTGTTGTGCTTTTGGAATTGCTAACTGGAAGAACACCAGTTCAGCCACTAGAGCAAGGAGGTGATCTTGTCACATGGGTAAGAAACCATATCCGGGAGCATAACAATACATTGACATCAGAAATACTTGACAGCCGTGTGGATCTTGAAGACCAAATCACCACAAATCACATGCTCACTGTTTTGAAACTTGCTTTAGTATGCACAAGTATGTCTCCTTCTAAGAGGCCATCAATGAGGGAAGTTGTGTCCATGCTCATTGAGTCTAATGAGAAAGAAGGAAACTTAACACTCACTCAAACATACCATGATCTTCCTTCCAAAGATGGCATATGA 3132 0.3994 MSGNIKEGRALAKGCFVILLLLILLLCSTEGLNTEGQILLELKNGLHDELNLLGNWKSTDETPCGWTGVNCSYEYSSNYNPVVVSLNLSSMGLSGTLNASIGGLTHLTYLNLAFNDLIGNIPKEISECLSLEYIYLNNNQFEGPIPSELSKLSVLRNLNICNNKLSGVIPDEFGNLSSLVELVAYSNFLVGPLPNSIGNLKNLASFRVGANNITGTLPKEIGRCRNLIRLGLAQNQIGGEIPSEIGMLSSLKELILWENQFSGPIPKELGNCSSLETLALYGNNLIGPLPPEIGNLKSLKWLYFYRTKLNGTIPREIGNLSSAIHIDFSENSLVGDIPSEFSKISGLSLLFLFENQLTGVIPDEFSSLKNLTKLDLSLNHLTGSIPLGFQYLTQMFQLQLFGNSLSGIIPQGLGLHSPLWVVDFSDNKLTGRIPPHLCRNSRLMLLNLAGNQLYGNIPTGILNCESLAQLVLTGNRLTGGFPSELCKLVNLTAIDLNENRFSGPLPPEIANCHKLQRLHIANNYFISKLPKAIGNLSQLVTFNVSSNLFTGRIPPEIFWCQRLQRLDLSQNRFNGSLPSEIGTLQHLEILKLSDNKLSGYIPASLGNLSHLNWLLMGGNLFSGEIPSHLGSLSSLQIGMDLSYNNLSGRIPSQLGNLNMLEYLLLNNNHLDGEIPSTFAELSSLLGCNFSYNNLSGPIPSTKIFQSMDVSSFIGGNKGLCGSPLGDCNTNSASHSDPSGESVESPRAKIVMIIAALVGGVSLILIIVILYYMRRPRESIDSFRDTESPSPDSDIYFPPKEGFTFQDLIEATKRFHESYVIGRGACGTVYKAVMKSGKTIAVKKLASNREGNNIENSFRAEILTLGRIRHRNIVKLYGFCYHQGSNLLLYEYMERGSLGELLHGSAIAGSYGYIAPEYAYTMKVTEKCDIYSYGVVLLELLTGRTPVQPLEQGGDLVTWVRNHIREHNNTLTSEILDSRVDLEDQITTNHMLTVLKLALVCTSMSPSKRPSMREVVSMLIESNEKEGNLTLTQTYHDLPSKDGI 1043
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi301g00047 1043 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase 779 891 - -
Sebi301g00047 1043 Gene3D Ribonuclease Inhibitor 32 196 IPR032675 -
Sebi301g00047 1043 Gene3D Phosphorylase Kinase; domain 1 782 890 - -
Sebi301g00047 1043 Gene3D Transferase(Phosphotransferase) domain 1 891 1036 - -
Sebi301g00047 1043 SUPERFAMILY RNI-like 241 574 - -
Sebi301g00047 1043 SUPERFAMILY L domain-like 503 722 - -
Sebi301g00047 1043 Gene3D Ribonuclease Inhibitor 600 729 IPR032675 -
Sebi301g00047 1043 Gene3D Ribonuclease Inhibitor 359 457 IPR032675 -
Sebi301g00047 1043 ProSiteProfiles Protein kinase domain profile. 814 1043 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi301g00047 1043 Gene3D Ribonuclease Inhibitor 458 599 IPR032675 -
Sebi301g00047 1043 Pfam Leucine rich repeat 562 620 IPR001611 GO:0005515
Sebi301g00047 1043 Pfam Leucine rich repeat 346 405 IPR001611 GO:0005515
Sebi301g00047 1043 FunFam Leucine-rich repeat receptor-like protein kinase PEPR1 31 194 - -
Sebi301g00047 1043 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase isoform B 288 392 - -
Sebi301g00047 1043 SUPERFAMILY Protein kinase-like (PK-like) 790 1021 IPR011009 -
Sebi301g00047 1043 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 416 731 - -
Sebi301g00047 1043 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 467 1018 - -
Sebi301g00047 1043 FunFam Probable leucine-rich repeat receptor-like protein kinase At2g33170 195 287 - -
Sebi301g00047 1043 Pfam Leucine rich repeat N-terminal domain 33 72 IPR013210 -
Sebi301g00047 1043 Gene3D Ribonuclease Inhibitor 203 358 IPR032675 -
Sebi301g00047 1043 SMART LRR_typ_2 657 680 IPR003591 -
Sebi301g00047 1043 SMART LRR_typ_2 200 224 IPR003591 -
Sebi301g00047 1043 SMART LRR_typ_2 152 175 IPR003591 -
Sebi301g00047 1043 SMART LRR_typ_2 488 512 IPR003591 -
Sebi301g00047 1043 SMART LRR_typ_2 104 128 IPR003591 -
Sebi301g00047 1043 SMART LRR_typ_2 584 608 IPR003591 -
Sebi301g00047 1043 SMART LRR_typ_2 536 560 IPR003591 -
Sebi301g00047 1043 SMART LRR_typ_2 368 391 IPR003591 -
Sebi301g00047 1043 SMART LRR_typ_2 248 272 IPR003591 -
Sebi301g00047 1043 Pfam Protein kinase domain 815 902 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi301g00047 1043 Pfam Protein kinase domain 906 1016 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi301g00047 1043 SUPERFAMILY L domain-like 34 311 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi301g00047 Sebi-Chr301 1100146 1104050 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi301g00047 32 924 Receptor kinase-like Gene Family AT5G56040 35.563 3.98e-152 479
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Sebi301g00047 Pkinase 3e-10 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi301g00047 - - gmx:100805792 1462.2