Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi301g00043 ATGGAGGTCCTTGGTTCTGTGGATGATCTCTTGGATTTCTCATCAGACATAGGTGAGGAAGATGATGATGACAATAAACCTAGGAAAGCCTTTCCTTCACTTAACCCAAAATGCAGTAATCCACCACCGTTCAACCCATTGGACCCGGATGATCCTAGCCATTCATTTTCTGAGTTTGCAGAAGAGGAGCTTGAATGGCTATCCAACAAAGATGCATTTCCTGCTGTTGAAACATTTGTTGACATGCACTCTATTCAACCTGATATATCAAAGCATCAAAAGACAACTCCAATGCTTGAGTACAGCACAAGCAGTAGCAACAGTAATAACAGCACCAACAGTGTTAGCCTCTTAAATGGCTATGATCACCTGAAAGTCCCTGTCCGTGCACGGAGCAAGTGTCGAACTAGACGTCGCTCTGGCATTGCTGACATCTCTGGCCAACAATTCTGGTGGACACAACCTAGTAACAAAAATTCCAAAGAAGAAGAAGTGATCAAAATGTCAACCATTGGGAGGAAATGTCATCACTGCGGAGCTGAAAAAACTCCACAATGGAGGGCCGGTCCCCTTGGTCCAAAGACACTTTGTAATGCATGTGGGGTTAGGTTTAAGTCTGGCCGGCTTGTGCCTGAATACCGTCCTGCAAGTAGCCCAACTTATCGTAGTGACTTGCATTCTAATTCCCACAGGAAGATAATTGAGATGAGGAGGCAGAAGCAAGTAGGGATGGTTTAA 738 0.4472 MEVLGSVDDLLDFSSDIGEEDDDDNKPRKAFPSLNPKCSNPPPFNPLDPDDPSHSFSEFAEEELEWLSNKDAFPAVETFVDMHSIQPDISKHQKTTPMLEYSTSSSNSNNSTNSVSLLNGYDHLKVPVRARSKCRTRRRSGIADISGQQFWWTQPSNKNSKEEEVIKMSTIGRKCHHCGAEKTPQWRAGPLGPKTLCNACGVRFKSGRLVPEYRPASSPTYRSDLHSNSHRKIIEMRRQKQVGMV 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi301g00043 245 CDD ZnF_GATA 174 222 IPR000679 GO:0006355|GO:0043565
Sebi301g00043 245 FunFam GATA transcription factor 163 245 - -
Sebi301g00043 245 Gene3D - 169 222 IPR013088 GO:0006355|GO:0008270
Sebi301g00043 245 MobiDBLite consensus disorder prediction 1 54 - -
Sebi301g00043 245 ProSitePatterns GATA-type zinc finger domain. 175 200 IPR000679 GO:0006355|GO:0043565
Sebi301g00043 245 ProSiteProfiles GATA-type zinc finger domain profile. 169 205 IPR000679 GO:0006355|GO:0043565
Sebi301g00043 245 Pfam GATA zinc finger 175 208 IPR000679 GO:0006355|GO:0043565
Sebi301g00043 245 SMART GATA_3 169 219 IPR000679 GO:0006355|GO:0043565
Sebi301g00043 245 PANTHER GATA TRANSCRIPTION FACTOR 6 241 - -
Sebi301g00043 245 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 171 232 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi301g00043 Sebi-Chr301 973802 975384 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi301g00043 1 243 C2C2-Gata Transcription Factor Family AT3G24050 37.681 1.11e-46 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Sebi301g00043 GATA 1.2e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi301g00043 - - gmx:100784527 375.17