Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi301g00012 ATGTCGCTGCCGGAATGTTCCGCGTCGCAACTGGCGCAGTTAATCGGCCCCAACGCGACAAACGCCGCCGCCGCCGCCAATTTCATCTGTGAACAGTTCGCCGCTGTAGGGAACAAGTTCACCGACACAGCATTTGCGGTGGACAACACGTACCTTCTCTTCTCAGCTTATCTAGTTTTCTCTATGCAGCTCGGTTTCGCCATGCTCTGTGCCGGTTCAGTTCGCGCAAAGAACACCATGAACATCATGCTCACCAACGTCCTTGACGCCGCCGCCGGTGGCCTCTTCTACTACCTCTTCGGCTTCGCCTTTGCCTTCGGTGCACCTTCCAACGGCTTCATCGGTAAGCACTTCTTCGGCCTCAAAGACGTTCCTACAGACAGCTTTGACTACAGTAACTTCCTTTACCAGTGGGCTTTTGCCATCGCCGCCGCCGGCATCACCAGCGGATCCATCGCCGAACGGACACAGTTCGTGGCTTACCTTATTTACTCTTCCTTCCTCACCGGCTTTGTCTACCCTGTGGTTTCTCACTGGTTCTGGTCAGGTGATGGCTGGGCCAGTGCCTTTAACACCGGGGACCTGTTATTTGGCACCGGAGTGATCGACTTTGCCGGCTCCGGCGTCGTCCATATGGTCGGCGGAATCGCTGGTCTCTGGGGTGCCCTAATTGAAGGTCCTAGAATAGGACGTTTTGACCATACCGGTCGAGCCATCGCGCTTCGTGGACACAGCGCTTCCCTTGTTGTTCTTGGAACCTTCATGCTTTGGTTCGGTTGGTACGGTTTTAACCCTGGCTCCTTTAACAAGATTCTCAACGCTTATAATTCAGGTAACTATTATGGCCAGTGGAGTGCGGTGGGAAGGACCGCCGTGACGACCACGTTGGCTGGTTGCACGGCGGCGCTGACTACTCTTTTTGGAAAAAGAATTCTCTCCGGTCACTGGAACGTTACCGATGTGTGTAACGGTTTGTTGGGCGGGTTTGCTGCTATTACTGCTGGGTGCTCCGTTGTGGAGCCGTGGGCTGCCATCGTGTGTGGTTTCGTGGCTGCGGTGGTTTTGATCGCGTGTAACAGACTCGCGGAGAAGGTGCGTTTTGATGATCCGTTGGAAGCCGCGCAGCTTCACGGAGGTTGTGGCGCGTGGGGGGTTATATTCACCGCGTTGTTCGCTAAGGAGGAGTATGTGAACCAGGTTTACCCAGGTAAACCGGTCGACCTTACGGGTTTTCATGGGTGGTGGAGGGAAGCTGTTGGGGGCGCACGTGATTCAGGTTTTGGTTATTACCGGTTGGGTCAGTGCCACCATGGTCCTCTTTTCTATTTTCTGAATAAGATGAATTTGCTTCGGATCTCCGCGGAGGATGAACTTGCGGGTATGGATATGACCCGACATGGTGGTTTTGCTTATGCCTATGAGGATGAGTCGCACAAGCATGGGATTCAGTTGAGGAAGATTGAGCCTAACGCTTCCACGCCCACTACCACAGATTCATGA 1500 0.54 MSLPECSASQLAQLIGPNATNAAAAANFICEQFAAVGNKFTDTAFAVDNTYLLFSAYLVFSMQLGFAMLCAGSVRAKNTMNIMLTNVLDAAAGGLFYYLFGFAFAFGAPSNGFIGKHFFGLKDVPTDSFDYSNFLYQWAFAIAAAGITSGSIAERTQFVAYLIYSSFLTGFVYPVVSHWFWSGDGWASAFNTGDLLFGTGVIDFAGSGVVHMVGGIAGLWGALIEGPRIGRFDHTGRAIALRGHSASLVVLGTFMLWFGWYGFNPGSFNKILNAYNSGNYYGQWSAVGRTAVTTTLAGCTAALTTLFGKRILSGHWNVTDVCNGLLGGFAAITAGCSVVEPWAAIVCGFVAAVVLIACNRLAEKVRFDDPLEAAQLHGGCGAWGVIFTALFAKEEYVNQVYPGKPVDLTGFHGWWREAVGGARDSGFGYYRLGQCHHGPLFYFLNKMNLLRISAEDELAGMDMTRHGGFAYAYEDESHKHGIQLRKIEPNASTPTTTDS 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi301g00012 499 PANTHER AMMONIUM TRANSPORTER 21 474 - -
Sebi301g00012 499 ProSitePatterns Ammonium transporters signature. 203 228 IPR018047 GO:0008519|GO:0016020|GO:0072488
Sebi301g00012 499 FunFam Ammonium transporter 29 486 - -
Sebi301g00012 499 SUPERFAMILY Ammonium transporter 47 396 - -
Sebi301g00012 499 Gene3D Ammonium transporter AmtB like domains 27 491 IPR029020 -
Sebi301g00012 499 Pfam Ammonium Transporter Family 51 471 IPR024041 GO:0008519|GO:0016020|GO:0072488
Sebi301g00012 499 NCBIfam ammonium transporter 48 471 IPR001905 GO:0008519|GO:0016020|GO:0072488
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi301g00012 Sebi-Chr301 198139 199834 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi301g00012 5 499 Inorganic Solute Cotransporters AT4G13510 78.244 0.0 776
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi301g00012 K03320 - qsa:O6P43_022085 776.163