Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi301g00010 ATGGCTGCCACAGCTGCTGCAGGCATAGCCTCCTTGTTTTCTTCTTCCATCAACACTGTCAAATGTCTCCGTTCCAAAAACTGCTCCATAGATCCTCTCATATCAACATCCTCAAACCGCATGTTAGCATCTCTGTCACAGTCCTATCTTACAGAACCTTTGCCTATTGGTAACATCTCACACAAGTTGTGGCTGCCTAGAATTTCTGCTGCTGTTGCACAGGAAGAGGTGGTAGTGGCTGCTGAGGCTGATGATGCTGGTTTTGTTGAAGAGGAGGAAGTGGTAGAAGAAGAAAACACTGAATCCCTTGTTGGCACCAAGCTTTATTTTGGGAATTTGCCTTACAGTGTTGATAGTGCACAACTTGCAGGGTTAATTGAGGAATATGGTAGCGCAGAACTAATTGAGGTTCTCTACAACAGGGACACTGGAAAAAGTAGAGGCTTTGCATTTGTGACAATGAGTTGTATTGAAGATTGTAATGCAGTAATAGAAAATCTTGATGGAAGAGTGTTCATGGGCCGAACCTTGCGGGTGAACTTTTCTGACAAACCAAAAGCAAAAGAACCATTGTACCCTGAAACTGAACATAAGCTTTTTGTTGGGAACTTGTCATGGTCAGTAACTTCTGAGAGTCTAACAGAAGTTTTCCAAGAATATGGAACTGTGGTTGGAGCTAGGGTCTTATATGATGGGGAAACTGGAAAGTCACGTGGTTATGGCTTTGTTTGCTTTTCTAAAAAATCAGAAATGGAAGCTGCCCTTGCATCCCTGAATGATGTGGAACTAGAAGGAAGAGCAATGCGTGTAAGCTTGGCTCAAGGAAAACGTTCAGAAGGTTAA 843 0.4294 MAATAAAGIASLFSSSINTVKCLRSKNCSIDPLISTSSNRMLASLSQSYLTEPLPIGNISHKLWLPRISAAVAQEEVVVAAEADDAGFVEEEEVVEEENTESLVGTKLYFGNLPYSVDSAQLAGLIEEYGSAELIEVLYNRDTGKSRGFAFVTMSCIEDCNAVIENLDGRVFMGRTLRVNFSDKPKAKEPLYPETEHKLFVGNLSWSVTSESLTEVFQEYGTVVGARVLYDGETGKSRGYGFVCFSKKSEMEAALASLNDVELEGRAMRVSLAQGKRSEG 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi301g00010 280 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 108 178 IPR000504 GO:0003723
Sebi301g00010 280 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 199 268 IPR000504 GO:0003723
Sebi301g00010 280 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 106 184 IPR000504 GO:0003723
Sebi301g00010 280 Gene3D - 188 280 IPR012677 -
Sebi301g00010 280 SUPERFAMILY RNA-binding domain, RBD 101 189 IPR035979 GO:0003676
Sebi301g00010 280 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 197 275 IPR000504 GO:0003723
Sebi301g00010 280 PANTHER OS02G0815200 PROTEIN 47 277 - -
Sebi301g00010 280 SUPERFAMILY RNA-binding domain, RBD 191 277 IPR035979 GO:0003676
Sebi301g00010 280 FunFam 28 kDa ribonucleoprotein, chloroplastic 188 278 - -
Sebi301g00010 280 Gene3D - 72 187 IPR012677 -
Sebi301g00010 280 CDD RRM2_NsCP33_like 198 273 - -
Sebi301g00010 280 SMART rrm1_1 198 271 IPR000504 GO:0003723
Sebi301g00010 280 SMART rrm1_1 107 180 IPR000504 GO:0003723
Sebi301g00010 280 FunFam 31 kDa ribonucleoprotein, chloroplastic 73 187 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi301g00010 Sebi-Chr301 139698 141569 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi301g00010 106 276 Eukaryotic Initiation Factors Gene Family AT3G16380 33.690 8.10e-19 84.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi301g00010 - - aprc:113871254 394.815